open_problems/.gitignore at main · gobbleyourdong/open_problems · GitHub

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# Build caches
__pycache__/
*.pyc
*.pyo

# Lean build artifacts
**/.lake/
.lake/
lake-manifest.json.lock

# Raw research datasets (download on demand)
**/transcriptomics/
**/raw_seq_data/

# Large binary archives
*.tar
*.tar.gz
*.tgz
*.zip
*.h5
*.hdf5
*.npz
*.parquet
*.bam
*.fastq
*.fastq.gz
*.csv.gz

# PDB / structural biology raw files
*.pdb
*.cif
*.mmcif
*.map
*.map.gz

# Trained model files
*.bin
*.safetensors
*.gguf
*.pt
*.pth
*.ckpt

# Session logs (use attempts/ instead per v3)
SESSION_*.md
STATUS_*.md
**/SCRATCHPAD.md

# Infographics (generated locally, not source)
infographics/

# Sigma method itself (lives only in ~/SIGMA_METHOD.md)
SIGMA_METHOD.md
.commit_lock.sh
.git_lock

# Infrastructure scripts (local tooling, not research)
triage.py
daily_report.py

# Claude Code session artifacts
.claude/
**/.claude/