fix: update minimum burst duration

src/cali/_constants.py

@@ -93,7 +93,7 @@ def natural_sort_key(text: str) -> list:
 # ==================== Default Values ====================
 DEFAULT_BURST_THRESHOLD = 65.0
 DEFAULT_CALCIUM_BURST_THRESHOLD = 25.0
-DEFAULT_MIN_BURST_DURATION = 3
+DEFAULT_MIN_BURST_DURATION = 500  # milliseconds
 DEFAULT_BURST_GAUSS_SIGMA = 0.3
 DEFAULT_FRAME_RATE = 10.0  # frames per second (fps)
 DEFAULT_DFF_WINDOW = 10.0  # seconds

src/cali/gui/_analysis_gui.py

@@ -956,7 +956,7 @@ def reset(self) -> None:
         self._burst_wdg.setValue(
             (
                 DEFAULT_BURST_THRESHOLD,
-                3000.0,  # 3 seconds = 3000ms
+                DEFAULT_MIN_BURST_DURATION,
                 DEFAULT_BURST_GAUSS_SIGMA,
             )
         )
@@ -1080,7 +1080,7 @@ def __init__(self, parent: QWidget | None = None) -> None:
         self._burst_min_duration_ms.setDecimals(2)
         self._burst_min_duration_ms.setRange(0.0, 100000.0)
         self._burst_min_duration_ms.setSingleStep(100.0)
-        self._burst_min_duration_ms.setValue(3000.0)  # 3 seconds
+        self._burst_min_duration_ms.setValue(DEFAULT_MIN_BURST_DURATION)
 
         self._burst_blur_label = QLabel("Burst Gaussian Blur Sigma:", self)
         self._burst_blur_label.setSizePolicy(*FIXED)
@@ -1317,7 +1317,7 @@ def reset(self) -> None:
         self._burst_wdg.setValue(
             (
                 DEFAULT_BURST_THRESHOLD,
-                3000.0,  # 3 seconds = 3000ms
+                DEFAULT_MIN_BURST_DURATION,
                 DEFAULT_BURST_GAUSS_SIGMA,
             )
         )

src/cali/sqlmodel/_model.py

@@ -47,6 +47,7 @@
     DEFAULT_ENABLE_RISING_EDGE_ANALYSIS,
     DEFAULT_FRAME_RATE,
     DEFAULT_HEIGHT,
+    DEFAULT_MIN_BURST_DURATION,
     DEFAULT_SPIKE_SYNC_JITTER_WINDOW,
     DEFAULT_SPIKE_SYNCHRONY_MAX_LAG,
     DEFAULT_SPIKE_THRESHOLD,
@@ -1154,10 +1155,10 @@ class AnalysisSettings(SQLModel, table=True):
     spike_threshold_value: float = DEFAULT_SPIKE_THRESHOLD
     spike_threshold_mode: str = MULTIPLIER
     burst_threshold: float = DEFAULT_BURST_THRESHOLD
-    burst_min_duration: float = 3000.0  # milliseconds (3 seconds)
+    burst_min_duration: float = DEFAULT_MIN_BURST_DURATION
     burst_gaussian_sigma: float = DEFAULT_BURST_GAUSS_SIGMA
     calcium_burst_threshold: float = DEFAULT_CALCIUM_BURST_THRESHOLD
-    calcium_burst_min_duration: float = 3000.0  # milliseconds (3 seconds)
+    calcium_burst_min_duration: float = DEFAULT_MIN_BURST_DURATION
     calcium_burst_gaussian_sigma: float = DEFAULT_BURST_GAUSS_SIGMA
     spikes_sync_cross_corr_lag: float = DEFAULT_SPIKE_SYNCHRONY_MAX_LAG  # ms
     spikes_sync_jitter_window: float = DEFAULT_SPIKE_SYNC_JITTER_WINDOW  # ms

tests/test_spike_jitter_parameter.py

@@ -31,7 +31,7 @@ def test_spike_data_has_jitter_field() -> None:
         spike_threshold=0.5,
         spike_threshold_mode="adaptive",
         burst_threshold=75.0,
-        burst_min_duration=3000.0,
+        burst_min_duration=500.0,
         burst_blur_sigma=1.0,
         synchrony_lag=1000.0,
         synchrony_jitter=200.0,
@@ -48,7 +48,7 @@ def test_spike_data_default_jitter_value() -> None:
         spike_threshold=0.5,
         spike_threshold_mode="adaptive",
         burst_threshold=75.0,
-        burst_min_duration=3000.0,
+        burst_min_duration=500.0,
         burst_blur_sigma=1.0,
         synchrony_lag=1000.0,
         synchrony_jitter=DEFAULT_SPIKE_SYNC_JITTER_WINDOW,