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GenBlastG

genBlast is a software developed by Rong She of the Jack Chen lab. The website describing it (including a web service, reference papers and the original source code) can be found here: http://genome.sfu.ca/genblast/

Changes

this is based on the GenBlastG 1.39 codebase

  • changed system calls to check the return status
  • changed some command line parameter munging to use snprintf to prevent buffer overruns
  • increased the maximum size of the blast command to 1024 bytes

Reason

This is a simple patch to prevent GenBlastG from randomly segfaulting as part of the WormBase production pipeline.

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patched version of genblastg v.139 of the Jack Chen lab

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