Reorganization

[dgaylo]

Changes

• Rather than a single utils folder with all files other than sovler.py, create labeling and reconstruction subpackage and put the other files (with a preceding underscore) in the top-level directory.
• Create apply_ccl as a (documented) public function to expose the labeling portion of the package.

[github-actions]

Benchmark Results

--------------------------------------------------------------------------------- benchmark 'test_bench_Chan': 2 tests --------------------------------------------------------------------------------
Name (time in us)               Min                   Max                Mean             StdDev              Median                IQR            Outliers  OPS (Kops/s)            Rounds  Iterations
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_bench_Chan (base)     543.0030 (1.0)      1,037.3150 (1.08)     580.8461 (1.0)      50.7720 (2.28)     572.3780 (1.0)      18.8150 (1.04)       76;111        1.7216 (1.0)        1842           1
test_bench_Chan (head)     577.3190 (1.06)       956.7480 (1.0)      609.2733 (1.05)     22.2375 (1.0)      607.5850 (1.06)     18.1493 (1.0)        221;64        1.6413 (0.95)       1743           1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------------------------- benchmark 'test_bench_WY': 2 tests ------------------------------------------------------------------------
Name (time in ms)           Min               Max              Mean            StdDev            Median               IQR            Outliers       OPS            Rounds  Iterations
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_bench_WY (head)     3.3877 (1.0)      6.0747 (1.45)     3.6156 (1.0)      0.5123 (6.52)     3.4421 (1.0)      0.0528 (1.0)         29;50  276.5760 (1.0)         296           1
test_bench_WY (base)     3.5535 (1.05)     4.1928 (1.0)      3.6477 (1.01)     0.0785 (1.0)      3.6263 (1.05)     0.0546 (1.03)        31;25  274.1419 (0.99)        278           1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------------------------- benchmark 'test_bench_base': 2 tests ------------------------------------------------------------------------
Name (time in ms)             Min               Max              Mean            StdDev            Median               IQR            Outliers       OPS            Rounds  Iterations
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_bench_base (base)     1.3928 (1.0)      2.8759 (1.0)      1.4401 (1.0)      0.1184 (1.53)     1.4131 (1.0)      0.0207 (1.21)        44;68  694.3926 (1.0)         717           1
test_bench_base (head)     1.4214 (1.02)     2.9298 (1.02)     1.4542 (1.01)     0.0772 (1.0)      1.4431 (1.02)     0.0171 (1.0)         23;54  687.6573 (0.99)        702           1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------------------------------- benchmark 'test_bench_no_norm': 2 tests --------------------------------------------------------------------------------
Name (time in us)                  Min                 Max                Mean             StdDev              Median                IQR            Outliers  OPS (Kops/s)            Rounds  Iterations
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_bench_no_norm (base)     311.1710 (1.0)      586.5740 (1.00)     332.8635 (1.0)      14.8158 (1.0)      330.5270 (1.0)      16.5970 (1.0)        617;80        3.0042 (1.0)        3197           1
test_bench_no_norm (head)     340.8070 (1.10)     584.8330 (1.0)      365.2717 (1.10)     16.8413 (1.14)     362.1525 (1.10)     17.4220 (1.05)       409;76        2.7377 (0.91)       2938           1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Legend:
  Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
  OPS: Operations Per Second, computed as 1 / Mean

• base: 06d6ced
• head: ceaa31c