Minor styling and QoL improvements

• Adapted the displayed message when the user interrupts a job
• Improve the error message to be more informative and tweak the styling
• Add some basic sanity checks on the API settings configuration

Interrupting of workflows

Interrupt running jobserver jobs when the user switches or reloads a WF
Allow the user to interrupt jobs in the current running WF

Add Content Security Policy Headers

Add configurable helmet.contentSecurityPolicy settings.
Contains default settings for running Compass locally in serverConfiguration.js.

Improve server status polling

Use a fully cached API endnode instead of a semi-cached one.

Minor fixes

• Fix an issue where data refresh causes the top table expansion functionality locking up caused by added listeners and streams getting interrupted
• Fix issue when a sample selection filter is removed triggering an update on unavailable data
• Hide outdated sample selection data when retrieving new data due a new selected perturbation
• Update Ramda to recent versions

v5.4.0 - Added perturbation replicate information

• Add perturbation replicate information in top table rows
• Make filter & perturbation replicate information sections in the top table rows expansible
• Hide server configuration files from the webserver
• Update of the Node version and npm packages
• Fix triple warning in the browser console about invalid fonts

v5.3.0

Functionality

• Add filters to the sample selection component

v5.2.0

Functionality

• Add exporting of report in Markdown format
• Add browser access to restarting the API
• Display tooltip for clipboard and download buttons in export menu

Other

• Filter functionality made dynamic so that new filter groups can be added as needed
• Improve sturdiness against invalid input
• Filter a-link references on 'do-not-route' before sending to the router

Deployment changes

• Requires extra translations for each filter type in deployments.json

v5.1.0

Functionality

• URL Queries: ComPass accepts URL queries and runs the complete analysis automatically. For instance, the following URI:

  http://localhost:3000/disease?autorun&signature=HSPA1A+DNAJB1+DDIT4+-TSEN2&numTableHead=10
  

  will run the Disease workflow using the signature HSPA1A DNAJB1 DDIT4 and will show 10 entries for the top table.

• Export: Add buttons to export data and plots to a file or copy it to the clipboard. A popup window is available with all the possible export features on the right bottom of the screen.

• Correlation workflow has filters.

• Sample tables can be sorted by clicking the columns header

Other

• Ghost mode has been improved, it no longer requires explicit timings in the scenarios
• Moved scss files from src/js to src/sass, so any alternative versions of e.g. _variables.scss or _main.custom.scss should now be placed in the new folder

Version 5.0.2

This is a bugfix release, fixing a bug in sample selection column truncation code.