Skip to content

Navigation Menu

Appearance settings

d3b-center

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

D3b

Center for Data Driven Discovery in Biomedicine at the Children's Hospital of Philadelphia

33 followers
Philadelphia, PA
http://d3b.center

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

bixtools bixtools Public

🐳 Dockerfiles for bioinformatics tools

Dockerfile 17 4

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All Common Workflow Language Dockerfile FreeMarker Go HCL HTML Java JavaScript Jupyter Notebook Nextflow Perl Python R Scala Shell TypeScript

Sort

Select order

Last updated Name Stars

Showing 10 of 152 repositories

peds-brain-auto-seg-public Public
D3b PedsBrainAutoSeg tool (public realease)

d3b-center/peds-brain-auto-seg-public’s past year of commit activity

Python 7 1 0 0 Updated Mar 27, 2026
fw-move-session-to-proj Public
Flywheel gear to move session to a destination project

d3b-center/fw-move-session-to-proj’s past year of commit activity

Python 0 0 0 0 Updated Mar 26, 2026
bixtools Public
🐳 Dockerfiles for bioinformatics tools

d3b-center/bixtools’s past year of commit activity

Dockerfile 17 4 0 2 Updated Mar 26, 2026
ambra-code Public
Code examples for all things Ambra Health

d3b-center/ambra-code’s past year of commit activity

Python 0 0 0 0 Updated Mar 26, 2026
d3b-flywheel-routine-missing-classifications Public
routine QC job for data hosted on Flywheel

d3b-center/d3b-flywheel-routine-missing-classifications’s past year of commit activity

Python 0 0 0 0 Updated Mar 13, 2026
fw-d3b-ped-auto-deface Public
Flywheel gear implementing pediatric defacing (model inference with pretrained weights (nnUnet))

d3b-center/fw-d3b-ped-auto-deface’s past year of commit activity

Python 0 Apache-2.0 0 0 0 Updated Mar 10, 2026
flywheel-soft-data-copy Public
Commands to use smart-copy functionality on Flywheel

d3b-center/flywheel-soft-data-copy’s past year of commit activity

Python 0 0 0 0 Updated Mar 5, 2026
d3b-api-client-cli Public
👨🏻‍💻 CLI client for APIs frequently used in D3b

d3b-center/d3b-api-client-cli’s past year of commit activity

Python 0 Apache-2.0 0 7 3 Updated Mar 4, 2026
D3b-RADIANT-Annotation Public
VCF annotation workflow for the RADIANT program

d3b-center/D3b-RADIANT-Annotation’s past year of commit activity

Nextflow 0 Apache-2.0 0 0 0 Updated Feb 27, 2026
d3b-tiru-flywheel-code-repo Public
Flywheel SDK example scripts

d3b-center/d3b-tiru-flywheel-code-repo’s past year of commit activity

Python 0 0 0 0 Updated Feb 26, 2026

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.