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ctglab / ctgflow Public template

forked from tjbencomo/ngs-pipeline

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Fix of missing index after BQSR and reduction of concurrent workers during testing#5

Merged

fhgre merged 6 commits intomasterctglab/ctgflow:masterfrom

feat/addition_of_test_samplesctglab/ctgflow:feat/addition_of_test_samplesCopy head branch name to clipboard

Mar 25, 2025

Conversation Commits6 (6)Checks Files changed

Merged

Fix of missing index after BQSR and reduction of concurrent workers during testing#5
fhgre merged 6 commits intomasterfrom
feat/addition_of_test_samples

Commits

Commits on Mar 25, 2025

enh: flag for controlling RAM in BQSR
danilotat
committed
enh: reduction of parallel processes during testing
danilotat
committed
fix: right path for gatk4 env, RAM as a parameter
danilotat
committed
Merge branch 'feat/addition_of_test_samples' of https://github.com/ctglab/ctgflow into feat/addition_of_test_samples
danilotat
committed
enh: reduction in resources request for samtools sort
danilotat
authored
fix: removal of hardcoded resources for samtools sort
danilotat
authored

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