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Harmony v2 version update

Status: Open.

#49 In corceslab/CHOIR;

· KarlKaise opened on May 4, 2026

Parallelization using {mori}

Status: Open.

#48 In corceslab/CHOIR;

· BiotechPedro opened on Apr 27, 2026

Error when max_clusters != "auto"

Status: Open.

#47 In corceslab/CHOIR;

· sian-wood opened on Mar 17, 2026

It takes a long time to run on both Windows and the SCC, and in practice it only uses a single core.

Status: Open.

#46 In corceslab/CHOIR;

· YifanWang-BU opened on Mar 2, 2026

CHOIR Fails with Leiden Clustering

Status: Open.

#45 In corceslab/CHOIR;

· marcobuttigieg opened on Oct 19, 2025

It takes more than 6 hours for CHOIR dealing with 170k cells using 100 CPUs?

Status: Open.

#44 In corceslab/CHOIR;

· LongpanICR opened on Aug 8, 2025

CHOIR yielded ~50 T-cell clusters—expected or over-splitting?

Status: Open.

#42 In corceslab/CHOIR;

· laleoarrow opened on Jul 10, 2025

Can I use plotCHOIR to show the prediction accuracy scores of my pre-generated clusters?

Status: Open.

#40 In corceslab/CHOIR;

· FY10086 opened on Jun 14, 2025

Mat::submat(): indices out of bounds or incorrectly used

Status: Open.

#39 In corceslab/CHOIR;

· YanCheer opened on May 24, 2025

Error in if (child_partner1_mean_accuracy > child_partner2_mean_accuracy) { : missing value where TRUE/FALSE needed

Status: Open.

#36 In corceslab/CHOIR;

· alifarhat40 opened on Apr 20, 2025

Problems with sketch Seurat object

Status: Open.

#32 In corceslab/CHOIR;

· maggiebr0wn opened on Apr 15, 2025

Pruning stuck checking for underclustering

Status: Open.

#29 In corceslab/CHOIR;

· doliv071 opened on Apr 9, 2025