Ptm shep parser updates#76

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mukul-kandwal wants to merge 6 commits intodevfrom

PTMShep_Parser_Updates

Commits on Sep 14, 2025

Ident_base_parser: Added temp logic to read glycan_database json string, Added Glyco_Decipher style to map_meta_data withonly spec_id; ptmshepherd_parser: Changed file origin metadata to come from …
mukul-kandwal
committed
edited pgylco_3 parser to include more columns in output
mukul-kandwal
committed
black reformatted
mukul-kandwal
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starting implementation of peptide forest parser

StSchulze
authored and
mukul-kandwal
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implemented peptide forest parser

StSchulze
authored and
mukul-kandwal
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removed pgylco glycan_DB specific column from parser finding logic
mukul-kandwal
committed