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chriswyatt1/README.md

Hi there πŸ‘‹

I'm a bioinformatician at UCL, working on omics pipeline development in evolution and ecology. I build reproducible, FAIR data pipelines β€” mostly Nextflow / nf-core workflows for sequencing and phenotypic data β€” and care a lot about making science others can re-run.

  • 🧬 Background in phylogenetics, molecular evolution, and alternative splicing regulation
  • πŸ”¬ Hands-on with RNA-Seq, proteomics, genomic and phenotypic data across evo-devo & ecology
  • πŸ› οΈ Nextflow / nf-core pipelines Β· Unix Β· R Β· Perl Β· Python
  • 🐝 PhD at the CRG (Barcelona); postdoc at UCL on wasp caste evolution; pipeline work at Seqera Labs

🌿 Eco-Flow

I lead Eco-Flow β€” a BBSRC-funded community developing open-source Nextflow pipelines for agri-ecology, working to close "the omics gap in ecology" with reproducible, accessible and scalable workflows (built to nf-core standards, tested with nf-test).

Pipelines (a growing collection):

Training & community: I organise nf-core hackathons, deliver multi-day Nextflow and bioinformatics workshops, and am an active member of the nf-core community and UCL's Advanced Research Computing (ARC) Centre.

πŸ“„ CV & links

Pinned Loading

  1. Eco-Flow/synteny Eco-Flow/synteny Public

    A Nextflow pipeline for running synteny analysis.

    Perl 19 4

  2. Eco-Flow/excon Eco-Flow/excon Public

    A pipeline to measure gene family expansion and contraction

    Perl 9 2

  3. Eco-Flow/training Eco-Flow/training Public

    A repository to run training courses

    Nextflow 4 1

  4. Eco-Flow/pollen-metabarcoding Eco-Flow/pollen-metabarcoding Public

    A pipeline developled in collaboration with Exeter University

    Nextflow 2

  5. nf-core/gwas nf-core/gwas Public

    UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

    Nextflow 28 28

  6. nf-core/genomeqc nf-core/genomeqc Public

    Compare the quality of multiple genomes, along with their annotations.

    Nextflow 23 24