R-programs for the Nordic and Barents Seas Atlantis NB!!!!! all your island boxes need to have temperature/salinity either set to 0 or another value, otherwise they'll get NaN values, which atlantis cannot be run with. NB!!! the forcing files requires these two steps after being created: all files (temp, saln, hydro, ice): ncrename -d t1,t inputfile.nc outputfile.nc
hydrofiles only: to change dest_k from 1 - 7 to 0 - 6 you'll need to run the following command: ncap2 -O -s 'dest_k-=1' inputfile.nc outputfile.nc