Skip to content
@caravagnalab

Caravagna Lab

The Cancer Data Science Laboratory at the University of Trieste, Italy. PI Giulio Caravagna.

Pinned Loading

  1. revolver revolver Public

    Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data

    R 67 26

  2. mobster mobster Public

    Model-based tumour subclonal deconvolution using population genetics

    HTML 35 9

  3. CNAqc CNAqc Public

    Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation

    R 26 9

  4. TINC TINC Public

    Tumour-in-normal contamination assessment for tumour-matched-normal assays

    R 6 3

  5. VIBER VIBER Public

    Variational inference for subclonal deconvolution with multivariate Binomial mixtures

    HTML 2 2

Repositories

Showing 10 of 45 repositories
  • material-tickTack-2026 Public

    code for the analysis of the tickTack paper

    caravagnalab/material-tickTack-2026’s past year of commit activity
    R 0 0 0 0 Updated Apr 20, 2026
  • ProCESS-examples Public
    caravagnalab/ProCESS-examples’s past year of commit activity
    HTML 0 0 1 0 Updated Apr 19, 2026
  • tickTack Public

    Pseudo-timing copy number alterations in cancer

    caravagnalab/tickTack’s past year of commit activity
    R 0 0 0 0 Updated Apr 17, 2026
  • tumourevo Public Forked from nf-core/tumourevo

    Tumour evolution bioinformatics analysis pipeline from bulk sequencing

    caravagnalab/tumourevo’s past year of commit activity
    0 MIT 6 0 0 Updated Apr 13, 2026
  • DeConveil Public

    Extension of Differential Gene Expression testing to handle genome aneuploidy in cancer

    caravagnalab/DeConveil’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Apr 7, 2026
  • DECONVEILp Public

    Bayesian differential gene-dosage model

    caravagnalab/DECONVEILp’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 7, 2026
  • lineaGT Public

    Variational lineage inference from gene therapy assays with insertional mutagenesis and somatic mutations

    caravagnalab/lineaGT’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • pylineaGT Public

    A Pyro model to perform lineage inference from Gene Therapy assays

    caravagnalab/pylineaGT’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • devil Public

    Fast and scalable inference for single-cell differential gene expression of multiple patients

    caravagnalab/devil’s past year of commit activity
    C++ 6 2 0 0 Updated Mar 24, 2026
  • INCOMMON_shiny Public

    Shiny Apps for INCOMMON

    caravagnalab/INCOMMON_shiny’s past year of commit activity
    R 0 0 0 0 Updated Mar 13, 2026
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…