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Remove species_compartments intermediary variable #8

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Remove species_compartments intermediary variable #8

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15 changes: 1 addition & 14 deletions jupyter_notebooks/createModel.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -202,19 +202,6 @@
"species_sheet = np.array([np.array(line.strip().split(\"\\t\")) for line in open('Species.txt', encoding='latin-1')])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#read in each line minus the header row of species file\n",
"species_compartments = [] # Create a list of \"home\" compartments for each species in the model\n",
"for row in species_sheet[1:]:\n",
" species_compartments.append(row[1]) \n",
"species_compartments = np.array(species_compartments)"
]
},
{
"cell_type": "markdown",
"metadata": {},
Expand All @@ -232,7 +219,7 @@
"fileModel.write(\"\\n\")\n",
"for idx,val in enumerate(species_sheet[1:]):\n",
" fileModel.write(\" Species \")\n",
" fileModel.write(\"%s in %s\" % (val[0], species_compartments[idx]))\n",
" fileModel.write(\"%s in %s\" % (val[0], val[1]))\n",
" fileModel.write(\";\\n\")"
]
},
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