chore: configure set-up files

.gitignore

@@ -1,182 +1,79 @@
-# Byte-compiled / optimized / DLL files
+# .gitignore - Natest Git Ignore Rules
+# Copyright © 2025 Aitomatic, Inc. Licensed under the MIT License.
+
+# Python
 __pycache__/
 *.py[cod]
-*$py.class
-
-# C extensions
 *.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
 *.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
-.hypothesis/
 .pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-# .env (we do want this, to add the library path during development)
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
 .mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
+.ruff_cache/
 
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-
-.*.bkp
-.*.dtmp
+# Environment
+.tmp/
+tmp/
+.venv/
+venv/
+.env
+.env.*
+!.env.example
+dana-config.json
+!dana-config.json.example
 
-.vscode/
-poetry.lock
-.gcloudignore
+# Testing and coverage
+.coverage
+pytest.ini
+
+# Logs and data
+local.db
+.dana/
+.poet/
+logs/
+local_executor/
+memory-bank/
+configs/
+
+# Editors and tools
+.qodo/
+*.swp
+*.swo
+.aider*
+.claude/
+dana-*.vsix
+
+# macOS
+.DS_Store
+.DS_Store?
 
-node_modules
-package.json
-package-lock.json
 
-.DS_Store
-.*.swp
-.*.swap
-**/favicon/test
-.env
-.openssm
-__pycache__
-/debug.py
-/mkdocs.yml
-/requirements.txt
+# Build artifacts
+build/
+dist/
+*.egg
+site/
+
+# Development files
+notebooks/
+proposal/
+uv.lock
+node_modules/
+.refactoring_*/
+.cache/
+.ipynb_checkpoints/
+.cursor/
+
+.vscode/launch.json
+.vscode/settings.json
+.deprecated_opendxa
+docs/.ai-only/ai_output/
+
+# Data files
+local.db
+test.db
+uploads
+dana/api/server/static/
+dana/contrib/ui/public/static/
+generated/
+agents/
+docs/.ai-only/ai_output/

.markdownlint.yaml

@@ -0,0 +1,100 @@
+# .markdownlint.yaml - Markdown Linting Configuration
+# Copyright © 2025 Aitomatic, Inc. Licensed under the MIT License.
+
+# MD004: Unordered list style (enforces consistent bullet style)
+MD004: false
+ul-style: false
+
+# MD005: Inconsistent indentation for list items at the same level (disallows inconsistent indentation for list items at the same level)
+MD005: false
+list-indent: false
+
+# MD007: Unordered list indentation (enforces consistent indentation for nested lists)
+MD007: false
+ul-indent: false
+
+# MD009: Trailing spaces (disallows lines ending with whitespace)
+MD009: false
+no-trailing-spaces: false
+
+# MD012: Multiple consecutive blank lines (disallows more than one blank line in a row)
+MD012: false
+no-multiple-blanks: false
+
+# MD013: Line length (enforces maximum line length)
+MD013: false
+line-length: false
+
+# MD022: Headings should be surrounded by blank lines
+MD022: false
+blanks-around-headings: false
+
+# MD024: Multiple headings with the same content (disallows duplicate headings)
+MD024: false
+no-duplicate-heading: false
+
+# MD025: Multiple top-level headings in the same document (enforces a single H1)
+MD025: true
+single-title: true
+
+# MD026: Trailing punctuation in heading (disallows punctuation at end of headings)
+MD026: false
+trailing-punctuation: false
+
+# MD028: Blank line inside blockquote (disallows blank lines within blockquotes)
+MD028: false
+no-blanks-blockquote: false
+
+# MD029: Ordered list item prefix (enforces consistent numbering style)
+MD029: false
+ol-prefix: false
+
+# MD030: Spaces after list markers (enforces correct spacing after list markers)
+MD030: false
+list-marker-space: false
+
+# MD031: Fenced code blocks should be surrounded by blank lines
+MD031: false
+blanks-around-fences: false
+
+# MD032: Lists should be surrounded by blank lines
+MD032: false
+blanks-around-lists: false
+
+# MD033: Inline HTML (disallows raw HTML in markdown)
+MD033: false
+no-inline-html: false
+
+# MD034: Bare URL used (disallows URLs not in angle brackets)
+MD034: false
+no-bare-urls: false
+
+# MD036: Emphasis used instead of a heading (disallows using bold/italic as section headers)
+MD036: false
+no-emphasis-as-heading: false
+
+# MD040: Fenced code blocks should have a language specified
+MD040: false
+fenced-code-language: false
+
+# MD041: First line in file should be a top-level heading
+MD041: false
+first-line-heading: false
+first-line-h1: false
+
+# MD047: Files should end with a single newline character
+MD047: false
+single-trailing-newline: false
+
+# MD051: Link fragment should be valid
+MD051: false
+link-title-style: false
+
+# MD055: Table pipe style (enforces consistent table pipe style)
+MD055: false
+table-pipe-style: false
+
+# MD058: Blank lines around tables (enforces blank lines before/after tables)
+MD058: false
+blanks-around-tables: false
+