Segmfriends

Bunch of tools and experiments for image segmentation

Install

Basic version from conda (Linux and Mac)

This version can run all the clustering/segmentation algorithms included the package. To install the package, you will need conda or miniconda

# Install the package:
conda create -n segmfriends -c abailoni segmfriends
# Activate your new 'speedrun' environment:
conda activate segmfriends

Full version

If you plan to work on the package or run the deep-learning tools in it, you will need to install some extra packages (including inferno, speedrun, neurofire, ConfNets):

• Clone the repository: git clone https://github.com/abailoni/segmfriends.git
• cd ./segmfriends
• chmod +x ./install_full_dependencies.sh
• To install the dependencies, you will need conda or miniconda
• Install the dependencies and the package by running ./install_full_dependencies.sh. While the script is running, you will need to confirm twice.
• The script will create a new conda environment called segmFriends including everything. You can activate your new environment with conda activate segmFr