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Working from home
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Working from home
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  • UChicago Department of Pediatrics, Pathology, and Human Genetics
  • Chicago
  • 14:00 (UTC -06:00)

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ZohebKhan1/README.md

I'm currently studying gene regulatory networks underlying congenital birth defects and progenitor maintenance/differentiation. I'm also studying the factors regulating neural crest lineage specification.

Research Interests

  • Transcriptomics & Epigenetics
  • Developmental Biology
  • Gene Regulatory Networks
  • Single-cell & Bulk RNA-seq Analysis

Technical Skills

Languages: R, Python, Bash, Nextflow Omics: RNA-seq, scRNA-seq, ChIP-seq, ATAC-seq, Micro-C

Links

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  1. maSigPro-clustering maSigPro-clustering Public

    Overview of using maSigPro in time-course RNA-seq analysis to: 1. define genes that are temporally variable across differentiation, 2. define genes that are temporally variable and are influenced s…

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  2. differentiation-comparison differentiation-comparison Public

    Example workflow of PCA-based method of comparing and visualizing differentiation progression (timing) between two groups of samples in bulk RNA-seq data. Specifically, this method allows the user …

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  3. temporal-transcription-factor-identification temporal-transcription-factor-identification Public

    This workflow identifies stage-specific transcription factor expression modules in time-series bulk RNA-seq data. The goal is to characterize the "waves" of TF expression that define each stage of …

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  4. tfclassify tfclassify Public

    tfclassify is an R package for annotating transcription factors (TFs) in differential expression data. It uses the curated database from Lambert et al. (2018) to validate gene lists and assign clas…

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