Add AlphaGenome adapter and multi-track support#6
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May 6, 2026
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- Add AlphaGenomeAdapter (src/deepISA/modeling/alpha_genome_adapter.py): single API call for multi-track/multi-biosample configs, sequence cache, probe-based n_tracks, backward-compatible single-track YAML format
- Add configs/ag_config_template.yaml with single- and multi-track examples
- Add notebooks/ag_biosample_reference.csv (714 biosamples × 10 assay types)
- Update tutorial notebook: local paths, AlphaGenome cells, multi-track docs
- Add tests: test_adapter.py, test_attr_filter_pipeline.py
- Update pyproject.toml and modeling init.py
- Add AlphaGenomeAdapter (src/deepISA/modeling/alpha_genome_adapter.py): single API call for multi-track/multi-biosample configs, sequence cache, probe-based n_tracks, backward-compatible single-track YAML format - Add configs/ag_config_template.yaml with single- and multi-track examples - Add notebooks/ag_biosample_reference.csv (714 biosamples × 10 assay types) - Update tutorial notebook: local paths, AlphaGenome cells, multi-track docs - Add tests: test_adapter.py, test_attr_filter_pipeline.py - Update pyproject.toml and modeling __init__.py
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