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Add NHP template files#387

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TakJim wants to merge 12 commits intoWashington-University:masterfrom
RIKEN-BCIL:add-nhp-templates
Open

Add NHP template files#387
TakJim wants to merge 12 commits intoWashington-University:masterfrom
RIKEN-BCIL:add-nhp-templates

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@TakJim
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@TakJim TakJim commented Mar 3, 2026

Add NHP template files and adjust parameters in some scripts.

Related to PR #364 review feedback.

Create global/templates/NHP_NNP/ directory to hold NHP-specific
template files required by FreeSurfer and fMRI pipelines. Template
files will be added in subsequent commits.

Related to PR Washington-University#364 review feedback.
@TakJim TakJim changed the title Add placeholder for NHP template files Add NHP template files Mar 3, 2026
@glasserm
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There seem like a lot of extraneous files in here.

Comment thread .gitattributes
@@ -0,0 +1 @@
*.gca filter=lfs diff=lfs merge=lfs -text
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Note, we haven't used git-lfs so far.

Comment thread .gitignore
Comment on lines +17 to +20
*.gca
*0.25mm*.nii.gz
*0.15mm*.nii.gz
*0.1mm*.nii.gz
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It seems wrong to .gitignore file patterns like this. Even with git-lfs handling .gca files, is it really necessary to also .gitignore them?

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4 participants