Open-source tools and data resources for connecting light-sensitive genes, physiological phenotypes, ecological context, and predictive models.
See the VisualPhysiologyDB ecosystem roadmap.
VisualPhysiologyDB
Central Project Repository Space for Visual Physiology Database; Operated by the Oakley Lab
- 1 follower
- United States of America
- https://labs.eemb.ucsb.edu/oakley/todd/
- oakley@ucsb.edu
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visual-physiology-opsin-db
visual-physiology-opsin-db PublicA database of opsin genotype-phenotype data and machine-learning models trained to predict opsin phenotypes.
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mine_n_match
mine_n_match PublicPython functions designed to mine and process sequence data from the National Center for Biotechnology Information (NCBI) databases.
Pep8
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mutagenesis_tools
mutagenesis_tools PublicA repository for all mutagenesis scripts - separate from VPOD - for those who want a streamline set of scripts for site-directed mutagenesis, chimera construction, and deep-mutational scanning.
Jupyter Notebook
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VisualPhysiologyDB.github.io
VisualPhysiologyDB.github.io PublicA repository for all html files and data needed to make configure our organization github.io pages :)
HTML
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visual-physiology-db-backend
visual-physiology-db-backend PublicA repository for all code necessary to host the Visual-Physiology Database
HTML
Repositories
Showing 8 of 8 repositories
- visual-physiology-db-backend Public
A repository for all code necessary to host the Visual-Physiology Database
VisualPhysiologyDB/visual-physiology-db-backend’s past year of commit activity - optics Public
An open-source tool that predicts the Opsin Phenotype (λmax) from unaligned opsin amino-acid sequences.
VisualPhysiologyDB/optics’s past year of commit activity - visual-physiology-opsin-db Public
A database of opsin genotype-phenotype data and machine-learning models trained to predict opsin phenotypes.
VisualPhysiologyDB/visual-physiology-opsin-db’s past year of commit activity - extra_optics_models Public
A repository for all the extra models that aren't part of the official VPOD releases. See the README for information about use.
VisualPhysiologyDB/extra_optics_models’s past year of commit activity - VisualPhysiologyDB.github.io Public
A repository for all html files and data needed to make configure our organization github.io pages :)
VisualPhysiologyDB/VisualPhysiologyDB.github.io’s past year of commit activity - mutagenesis_tools Public
A repository for all mutagenesis scripts - separate from VPOD - for those who want a streamline set of scripts for site-directed mutagenesis, chimera construction, and deep-mutational scanning.
VisualPhysiologyDB/mutagenesis_tools’s past year of commit activity - mine_n_match Public
Python functions designed to mine and process sequence data from the National Center for Biotechnology Information (NCBI) databases.
VisualPhysiologyDB/mine_n_match’s past year of commit activity
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