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trying to add all the format fields also in delly
pull sample field dynamically to avoid duplicate error
correct sample names
Add FT=PASS in FORMAT
Add FT to format
adjust to get correct samplename for proper joint delly
fixing sample names, note hard-coding for IS6110
try 3 fix sample names
remove force
try bcftools concat rather than merge
concat ismapper +delly pairs and then merge
Ensure IS6110 query sequence is correct
Minor tweaks to Wilma's original script
This is a bad idea.
Filling out additional info fields for the summarize_resistance script downstream.
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