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Merged
briandrawert merged 10 commits into from
Mar 1, 2023
Merged

Release 1.2.1 #345

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88be8d6
Updated version to v1.2.1
BryanRumsey Feb 9, 2023
44bfc61
Latest docs build.
github-actions[bot] Feb 9, 2023
fe428ef
Updated the copyright end year to 2023.
BryanRumsey Feb 9, 2023
8814450
timeout works, but does not include compile time in limit
briandrawert Feb 14, 2023
2054296
Fixes #253, timeout only counts execution time, compile time is ignored.
briandrawert Feb 14, 2023
667097a
Fixes #348
briandrawert Feb 15, 2023
a6776e7
Merge pull request #346 from StochSS/copyright-updates
briandrawert Mar 1, 2023
4e7048d
Merge pull request #347 from StochSS/253-simulation-error-is-raised-w…
BryanRumsey Mar 1, 2023
ea439f5
Merge branch 'develop' into fix_result_boject_multitrajectory
seanebum Mar 1, 2023
90f67ae
Merge pull request #349 from StochSS/fix_result_boject_multitrajectory
seanebum Mar 1, 2023
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SpatialPy is a Python 3 package for simulation of
spatial deterministic/stochastic reaction-diffusion-advection problems
Copyright (C) 2019 - 2022 SpatialPy developers.
Copyright (C) 2019 - 2023 SpatialPy developers.

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
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config: 594471ec9654e1c403c8655ed91ad300
tags: 645f666f9bcd5a90fca523b33c5a78b7
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var DOCUMENTATION_OPTIONS = {
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VERSION: '1.2.0',
VERSION: '1.2.1',
LANGUAGE: 'en',
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Expand Down Expand Up @@ -800,7 +800,7 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
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<title>Documentation for SpatialPy 1.2.0 &#8212; SpatialPy 1.2.0 documentation</title>
<title>Documentation for SpatialPy 1.2.1 &#8212; SpatialPy 1.2.1 documentation</title>
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<section id="documentation-for-spatialpy-release">
<h1>Documentation for SpatialPy 1.2.0<a class="headerlink" href="#documentation-for-spatialpy-release" title="Permalink to this heading">¶</a></h1>
<h1>Documentation for SpatialPy 1.2.1<a class="headerlink" href="#documentation-for-spatialpy-release" title="Permalink to this heading">¶</a></h1>
<p>SpatialPy is a Python 3 package for simulation of spatial deterministic/stochastic reaction-diffusion-advection problems embedded in Lagrangian reference frame particle based fluid dynamics domain</p>
<p>This package is intended to replace the PyURDME software <a class="reference external" href="https://github.com/pyurdme/pyurdme">https://github.com/pyurdme/pyurdme</a> and will feature both a NSM solver for RDME simulation on static domains and a sSSA-SDPD particle based fluid dynamics solver as described in the publication “A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems” by Drawert, Jacob, Li, Yi, Petzold <a class="reference external" href="https://www.sciencedirect.com/science/article/pii/S0021999118307101">https://www.sciencedirect.com/science/article/pii/S0021999118307101</a></p>
<section id="getting-a-copy-of-spatialpy">
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<title>Python Module Index &#8212; SpatialPy 1.2.0 documentation</title>
<title>Python Module Index &#8212; SpatialPy 1.2.1 documentation</title>
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