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AgInformatics

Python scripts written for a graduate level special topics course in solving problems with python -- with an emphasis on making research incorporating lots of data & bioinformatics tools a little less painful.

WARNING: very much a work in progress

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appendTaxGroup.py: creates a table including tip label from phylogenetic tree and the associated taxonomic group--extracted from fasta headers--that solves a small personal problem. Output table can be used as input to annotate phylogenetic trees based on taxonomic group using the R package ggtree. This is currently only really helpful to me, but check back later for a version that may be helpful for you, too.

hangman_Sipley.py: a game of Hangman! Computer selects a word at random, which you try to guess. Great for solitary amusement.

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Python scripts written for a special topics course in solving problems with python

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