Algae_Respirometry

This repository includes Haley Poppinga's Algae Respirometry Chapter: Data, Scripts, and Output.

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Haley Poppinga

University of Hawai‘i at Mānoa

School of Ocean and Earth Science and Technology Department of Oceanography

Silbiger Lab

Repository Contents:

• This repository contains information using data collected in Hawai‘i by Haley Poppinga and the Silbiger Lab.
• There are folders of Data, Scripts, R Project, and a README.md file.

Important Links:

• Silbiger Lab GitHub
• Respirometry Protocols Link Here
• Malama Maunalua Website Link Here!
• Background Paikō Environmental Data Quarto Link Here

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Folders:

• Data: dataset used for analyses (.csv), data dictionary
• Scripts: Quarto documents, ShinyApp folder + contents
• Output: Plots and maps

Data: Field Data

• Preliminary Background Environmental Data from Paikō
• Data Dictionary (need to add**)
• Folder: Respo_Files (from respo runs)

Scripts: Code

• Preliminary Environmental Data code: Quarto, HTML, and files
• Respirometry processing notes

Output: Maps and Plots

• Salinity, Temperature, Depth gradient maps in Paikō

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Technologies

• R: Programming language used in this course.
• RStudio: Environment used for coding.
• tidyverse: A collection of R packages for data science.
• here: An R package used for creating reproducible file paths.
• ggplot: "Grammar of Graphics" used for creating data visualizations.

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Contact

Feel free to contact me at hpopping@hawaii.edu