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SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

17 followers
Sweden

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gens gens Public

TypeScript 19 9
nextflow_wgs nextflow_wgs Public

Perl 9 6
nextflow_microwgs nextflow_microwgs Public

Perl 2 1
nextflow_tumwgs nextflow_tumwgs Public

Perl 2 2
SomaticPanelPipeline SomaticPanelPipeline Public

Nextflow 1 2

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All HTML JavaScript Nextflow Perl Python Roff Shell Standard ML TypeScript

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Showing 10 of 67 repositories

bonsai Public
Visualize and analyze resistance and outbreak of bacterial pathogen

SMD-Bioinformatics-Lund/bonsai’s past year of commit activity

Standard ML 6 GPL-3.0 3 38 8 Updated Mar 14, 2026
jasentool Public

SMD-Bioinformatics-Lund/jasentool’s past year of commit activity

Python 0 GPL-3.0 0 7 2 Updated Mar 14, 2026
virpipa Public
Virus assembly pipeline. First for HCV

SMD-Bioinformatics-Lund/virpipa’s past year of commit activity

Perl 0 MPL-2.0 0 0 0 Updated Mar 13, 2026
SomaticPanelPipeline Public

SMD-Bioinformatics-Lund/SomaticPanelPipeline’s past year of commit activity

Nextflow 1 2 22 (2 issues need help) 1 Updated Mar 13, 2026
nextflow_wgs Public

SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity

Perl 9 6 113 (3 issues need help) 6 Updated Mar 13, 2026
coyote3 Public
Coyote3 is a secure, scalable, and extensible web application designed as a one-stop solution for genomic variant interpretation, data management, and clinical reporting. Built by the @SMD-Bioinformatics-Lund, Lund,

SMD-Bioinformatics-Lund/coyote3’s past year of commit activity

Python 0 2 47 (2 issues need help) 0 Updated Mar 12, 2026
eyrie Public
Visualisation software for trana output

SMD-Bioinformatics-Lund/eyrie’s past year of commit activity

HTML 4 MIT 1 4 1 Updated Mar 12, 2026
coyote_cli Public
command line interface for coyote

SMD-Bioinformatics-Lund/coyote_cli’s past year of commit activity

Python 0 1 4 1 Updated Mar 11, 2026
nextflow_ST_rnaseqfus Public
A rnaseq fussion detection assay at CMD

SMD-Bioinformatics-Lund/nextflow_ST_rnaseqfus’s past year of commit activity

Nextflow 0 0 1 0 Updated Mar 10, 2026
nextflow_rnaseqfus Public
Fusion genes identification pipeline

SMD-Bioinformatics-Lund/nextflow_rnaseqfus’s past year of commit activity

Nextflow 1 4 8 0 Updated Mar 10, 2026

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