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finished testing the LocalNeighborhood. Moving to make the dockerfile
annaritz
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Jul 9, 2024
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Some minor comments about BTB; also please remove the local-neighborhood code. Thanks!
test/parse-outputs/expected/local_neighborhood-pathway-expected.txt
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annaritz
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Jul 9, 2024
gabeah
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Jul 11, 2024
spras/btb.py
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| edges = data.get_interactome() | ||
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| # Format into directed graph | ||
| edges.convert_undirected_to_directed() |
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change to edges = convert_undirected_to_directed(edges)
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Merge conflict fixed! It should be all ready to be merged into spras as a whole! |
tristan-f-r
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May 23, 2025
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[these should be changed before merging]
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We want all of the local neighborhood files back.
| FROM python:3.8-bullseye | ||
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| WORKDIR /btb | ||
| RUN wget https://raw.githubusercontent.com/Reed-CompBio/BowTieBuilder-Algorithm/main/btb.py |
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| RUN wget https://raw.githubusercontent.com/Reed-CompBio/BowTieBuilder-Algorithm/main/btb.py | |
| RUN wget https://raw.githubusercontent.com/Reed-CompBio/BowTieBuilder-Algorithm/dd8519cd8a8397c0e0724106f498b6002d3f7be2/btb.py |
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