Synthetic Network Preprocessing#10
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ctrlaltaf wants to merge 17 commits intoReed-CompBio:mainfrom
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ctrlaltaf
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Feb 24, 2025
ctrlaltaf
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- Includes @oliverfanderson features to process the STRINGdb human interactome network, PantherDB pathways, generate source/target and prizes, and namespace mapping between STRING and PantherDB
R script for parsing human interactome based on experimental evidence values R script for taking PANTHER pathways and parsing into STRING ID edge list
Now can access a list of TFs and Receptors to process a PANTHER pathway into sources and targets.
Used the function to generate Source and Target sets for 14 PANTHER pathways
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Closed in favor of #22. |
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