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@Raj-Lab-UCSF

Raj Lab @ UCSF

The Brain Networks Laboratory at UCSF is led by Dr. Ashish Raj, and focuses on applying network theory and computational tools to problems in neuroimaging.

Popular repositories Loading

  1. Aggregation-Network-Diffusion Aggregation-Network-Diffusion Public

    Code for implementing the Aggregation-Network diffusion model (AND), as described in the paper: "Combined Model of Aggregation And Network Diffusion Recapitulates Alzheimer’s Regional Tau-PET " by …

    MATLAB 11 2

  2. spectrome spectrome Public

    Spectral graph model base code and examples

    Jupyter Notebook 7 5

  3. IntDegSeg IntDegSeg Public

    A repository for the article Integrative, Segregative, and Degenerate Harmonics of the Structural Connectome

    MATLAB 4

  4. journalclub journalclub Public

    Journal Club

    3 7

  5. cortography cortography Public

    Utilities for brain atlas related tasks

    Jupyter Notebook 2 3

  6. Nexis Nexis Public

    Code for running the extended Network Diffusion Model (eNDM)

    MATLAB 2

Repositories

Showing 10 of 36 repositories
  • RajLab-Bibliography Public

    Bibliography files for RajLab papers

    Raj-Lab-UCSF/RajLab-Bibliography’s past year of commit activity
    TeX 2 0 0 0 Updated Dec 24, 2025
  • Stage-based-Network-Diffusion Public

    Stage-based Network Diffusion (StaND) for Alzheimer's tau progression modeling.

    Raj-Lab-UCSF/Stage-based-Network-Diffusion’s past year of commit activity
    Python 2 Apache-2.0 1 0 0 Updated Oct 30, 2025
  • NTM_ru Public

    Network Transport Model of Tau spread including cellular release and uptake mechanisms

    Raj-Lab-UCSF/NTM_ru’s past year of commit activity
    MATLAB 0 0 0 0 Updated Jul 10, 2025
  • EBM-Nexis Public

    Nexis code to be run on EBM time series, including forward/inverse and individual/cohort fitting

    Raj-Lab-UCSF/EBM-Nexis’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jul 3, 2025
  • SuStaIn Public

    SuStaIn event based model, data preprocessing and analysis

    Raj-Lab-UCSF/SuStaIn’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 17, 2025
  • CellTypeVulnerability Public

    Mouse tauopathy cell-type regional vulnerability project

    Raj-Lab-UCSF/CellTypeVulnerability’s past year of commit activity
    MATLAB 2 MIT 0 0 0 Updated Jan 31, 2025
  • Nexis Public

    Code for running the extended Network Diffusion Model (eNDM)

    Raj-Lab-UCSF/Nexis’s past year of commit activity
    MATLAB 2 MIT 0 0 0 Updated Jan 15, 2025
  • Tau_Transport Public

    Code and data files required to generate all results for the axonal transport regulation project

    Raj-Lab-UCSF/Tau_Transport’s past year of commit activity
    MATLAB 1 MIT 0 0 0 Updated Jan 15, 2025
  • Nexis-Human Public

    Nexis set up to fit to individual human data (gene or global)

    Raj-Lab-UCSF/Nexis-Human’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jan 8, 2025
  • MISS-Pipeline Public

    Method for mapping cell types across brain using ISH atlases

    Raj-Lab-UCSF/MISS-Pipeline’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Jan 8, 2025
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Most used topics

brain connectome