Update configuration

.latexmkrc

@@ -1,4 +1,6 @@
-ensure_path( 'TEXINPUTS', './configuration/' );
+ensure_path( 'TEXINPUTS', 'configuration' );
+ensure_path( 'TEXINPUTS', 'configuration/packages//');
+ensure_path( 'LUAINPUTS', 'configuration' );
 $pdf_mode=4;
 $lualatex = 'lualatex  %O -halt-on-error -synctex=1 --shell-escape %S';
 $out_dir = '.';
@@ -23,7 +25,7 @@ sub mmz_analyze {
     my $base = $$Pbase;
     my $mmz_file = "$aux_dir1$base.mmz";
     $mmz_has_new = '';
-    
+
     if (! -e $mmz_file) {
         print "mmz_analyze: No mmz file '$mmz_file', so memoize is not being used.\n";
         return 0;
@@ -46,7 +48,7 @@ sub mmz_analyze {
          s/\s*$//;           # Remove trailing space, including new lines
          if ( /^\\mmzNewExtern\s+{([^}]+)}/ ) {
              # We have a new memo item without a corresponding pdf file.
-             # It will be put in the aux directory. 
+             # It will be put in the aux directory.
              my $file = "$aux_dir1$1";
              print "mmz_analyze: new extern for memoize: '$file'\n";
              push @externs, $file;
@@ -64,11 +66,11 @@ sub mmz_analyze {
     close $mmz_fh;
     foreach (@dirs) {
         if ( ! -e ) {
-            my @cmd = ( @memoize_extract, '--mkdir', $_ ); 
+            my @cmd = ( @memoize_extract, '--mkdir', $_ );
             print "mmz_analyze: Making directory '$_' safely by running\n",
                   " @cmd\n";
             mkdir $_;
-        }        
+        }
     }
 
     rdb_ensure_files_here( @externs );
@@ -77,7 +79,7 @@ sub mmz_analyze {
     if (@externs ) {
         $mmz_has_new = $mmz_file;
     }
-    return 0; 
+    return 0;
 }
 
 #-----------------------------------------------------
@@ -94,7 +96,7 @@ sub mmz_extract_new {
         print "mmz_extract_new : ENV{$_} = '$ENV{$_}'\n";
     }
     my @cmd = (@memoize_extract, '--format', 'latex',
-                    '--pdf', $pdf_file, $mmz_file_no_path ); 
+                    '--pdf', $pdf_file, $mmz_file_no_path );
 
     if ( ! -e $pdf_file ) {
         warn "mmz_extract_new: Cannot generate externs here, since no pdf file generated\n";
@@ -116,7 +118,7 @@ sub mmz_cleanup {
     use strict;
     print "============= I am mmz_cleanup \n";
     my @cmd = ( @memoize_clean, '--all', '--yes',
-                      '--prefix', $aux_dir, 
+                      '--prefix', $aux_dir,
                       "$aux_dir1$$Pbase.mmz" );
     print "mmz_cleanup: Running\n @cmd\n";
     my $ret = system @cmd;
@@ -125,4 +127,3 @@ sub mmz_cleanup {
 }
 
 #-----------------------------------------------------
-

configuration.lua

@@ -0,0 +1,259 @@
+--- Configuration module for LuaLaTeX document
+-- 
+-- This module provides a centralized configuration system for LaTeX document settings,
+-- asset management, references, and typesetting options. The configuration can be
+-- overridden by a user-specific configuration file in the repository root.
+--
+-- @module configuration
+-- @return Configuration table
+
+local configuration = {}
+
+-- Build system configuration
+-- Controls output directories and build artifacts
+configuration.build = {
+    -- Directory for intermediate build files (aux, log, etc.)
+    dir = 'build/',
+    -- Directory for final output files (PDFs)
+    out = 'pdf/'
+}
+
+-- Asset management configuration
+-- Controls how external assets (images, tables, etc.) are handled
+configuration.assets = {
+    -- Root directory for all assets
+    root = 'assets/',
+    -- Enable custom LaTeX macros for quick insertion of figures/tables/etc.
+    shortcuts = true,
+    -- Enable externalization of assets (caching processed versions)
+    -- 	For externalization 'memoize' package is used. Note that this
+	-- 	requires quite modern LaTeX version, as well as some external
+	--- dependicies, like Perl and PDF::API2 library
+    externalize = true,
+    -- Asset type configurations:
+    -- 'keep' - memoize puts files in the same directory as source
+    -- 'build' - memoize puts files into build directory  
+    -- 'none' - disable memoization for this asset type
+    dirs = {
+        images = { path = 'images/', extern = 'keep' },      -- Raster/vector images
+        tables = { path = 'tables/', extern = 'build' },     -- Data tables, CSV files
+        diagrams = { path = 'diagrams/', extern = 'keep' },  -- Diagram source files
+        listings = { path = 'listings/', extern = 'keep' }   -- Code listings
+    }
+}
+
+-- References and bibliography configuration
+-- Manages citations, indexes, and knowledge graphs
+configuration.references = {
+	enable = true,
+	--- Tooling for references
+	hyperref = {
+	  shortref = {
+		{csname = 'picref', reftext = 'рис.'},
+		{csname = 'tabref', reftext = 'табл.'},
+		{csname = 'lstref', reftext = 'листинг'},
+		{csname = 'digref', reftext = 'диаг.'},
+		{csname = 'secref', reftext = 'разд.'}
+	  },
+	  hypersetup = {
+		breaklinks=true,
+		hyperindex=true,
+		colorlinks=true,
+		hidelinks=false,
+        hypertexnames='false', --- fix, cause right now false boolean filds are ignored
+		unicode=true,
+		pdfauthor={'Unknown Author'},
+		pdfsubject={'Document Subject'},
+		pdfkeywords={'keyword1, keyword2'},
+		pdftitle={'Document Title'},
+		bookmarksopen=false,
+		linktocpage=true,
+		plainpages=false,
+		pdfpagelabels=true,
+		-- Link colors
+		urlcolor='blue',
+		linkcolor='red',
+		filecolor='red',
+		citecolor='blue'
+	  }
+	},
+    -- Bibliography sources configuration
+    bibtex = {
+        -- Base path for bibliography files
+        path = 'assets/bibliography',
+		style = 'numeric',
+        -- List of bibliography databases with display names
+        bibliographies = {
+            {
+                name = 'main',  -- Main literature bibliography
+                title = 'Список литературы',  -- Main literature bibliography
+                files = 'main.bib',
+            },
+            -- {
+            --     name = 'git',  -- Software/online sources
+            --     title = 'Репозитории, трекеры, обсуждения',  -- Software/online sources
+            --     files = { 'repos.bib', 'issues.bib' },
+            -- }
+        }
+    },
+    -- Index generation configuration (imakeidx package)
+    indexes = {
+        -- Enable index generation
+        enable = true,
+		-- imakeidx options
+		build = {'makeindex'},
+        -- Configure individual indexes
+        list = {
+			-- Symbol index
+            { 
+			  name = 'notation',
+			  title = 'Список обозначений',
+			  intoc = true,
+			  --columns = 2,
+			  --columnsep = '15pt',
+			  --columnseprule = true,
+			},  
+			-- Main subject index
+            { 
+			  name = nil,
+			  title = 'Предметный указатель',
+			  intoc = true,
+			}                  
+        }
+    },
+    -- Knowledge configuration (knowledge package)
+    -- knowledge = {
+        -- Enable knowledge graph functionality
+        -- enable = true,
+        -- Configuration file for knowledge package
+        -- config = '.knowledgerc.tex'
+    -- }
+}
+
+-- Float environment configuration
+-- Controls figures, tables, listings, and other floating elements
+configuration.floats = {
+    -- Enable plugin for handling macroses
+    enable = true,
+    -- Graphics scaling and sizing options
+    images = {
+		-- Enable quiver package for commutative diagrams
+		quiver = 'enabled', -- alternative is 'draft' or 'disabled'
+		-- TODO: Enable drawio package for draw.io diagram integration  
+		-- drawio = 'enabled', -- alternative is 'draft' or 'disabled'
+
+		-- Default caption position 
+		caption = 'below',
+		-- Default width ratio to \linewidth for regular figures (0.0-1.0)
+        figurewidth = 0.9,
+        -- Default width ratio for wrapfigure environments (0.0-1.0)
+        wrapfigurewidth = 0.4,
+		--- Whether or not create separate list of figures
+		makeidx = true,
+    },
+	tables = {
+	  enables = true,
+	  caption = 'above',
+	  makeidx = true,
+	},
+    -- Code listing configuration
+    listing = {
+        -- Enable listing environment support
+        enable = true,
+		caption = 'above',
+        -- Enable syntax highlighting via pygmentize
+        pygmentize = true,
+		makeidx = true,
+    },
+    -- Caption and labeling configuration
+    captions = {
+        -- Language for automatic captions (e.g., "Figure", "Table")
+        lang = 'ru',
+    }
+}
+
+-- Typesetting and text macros configuration
+-- Controls custom text formatting, shortcuts, and theorem environments
+configuration.typesetting = {
+    -- Enable custom typesetting macros
+    enable = true,
+
+    -- Text shortcut configuration
+	shortcuts = true, 
+
+	-- Formatting features
+	formatting = {
+	  todo = true,
+	  ulem = true,
+	},
+    -- Theorem and proof environment configuration
+    theorems = {
+        -- Enable theorem-like environments (theorem, lemma, proof, etc.)
+        enable = true,
+		--- Theorem naming style
+		--- plain: 
+		---		theorem - numbered theorem
+		---		theorem* - unnumbered theorem
+		--- framed: 
+		---		Theorem - numbered theorem, framed
+		---		Theorem* - unnumbered theorem, framed
+		---		theorem - numbered theorem, not framed
+		---		theorem* - unnumbered theorem, not framed
+		thmstyle = 'framed',
+		enviroments = {
+		  {envname = 'theorem', name = 'Теорема'},
+		  {envname = 'lemma', name = 'Лемма'},
+		  {envname = 'proposition', name = 'Предложение'},
+		  {envname = 'definition', name = 'Определение'},
+          {envname = 'remark', name = 'Замечание'},
+
+		}
+    }
+}
+
+-- Mathematical typesetting configuration
+-- Controls math macros, symbols, and specialized notation
+configuration.mathematics = {
+    -- Enable mathematical typesetting macros
+    enable = true,
+	mathcommand = 'error',
+    -- Mathematical domain-specific plugin configuration
+    plugins = {
+        -- Algebra plugin: groups, rings, fields, linear algebra
+        algebra = {
+            enable = true,          -- Enable algebra macros
+            --knowledgify = true,     -- Generate knowledge graph entries
+            --indexify = false,       -- Add to index automatically
+        },
+        -- Calculus plugin: limits, derivatives, integrals
+        calculus = {
+            enable = true,
+            --knowledgify = true,
+            --indexify = false
+        },
+        -- Combinatorics plugin: combinations, permutations, graphs
+        combinatorics = {
+            enable = true,
+            --knowledgify = true,
+            --indexify = false
+        },
+        -- Probability plugin: distributions, expectations, random variables
+        probability = {
+            enable = true,
+            --knowledgify = true,
+            --indexify = false,
+        },
+        -- Foundations plugin: set theory, logic, category theory
+        foundations = {
+            enable = true,
+            --knowledgify = true,
+            --indexify = false
+        },
+        -- Complexity plugin: Big-O notation, complexity classes
+        complexity = {
+            enable = false  -- Disabled by default
+        }
+    }
+}
+
+return configuration