Add container no-go zones with spread-aware channel distribution#953

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BioCam wants to merge 31 commits intoPyLabRobot:mainfrom

BioCam:create-no_go_zones

Commits on Mar 23, 2026

Add no_go_zones attribute to Container and all subclasses

BioCam
and
claude
committed
Add compartment utilities for no-go zone channel distribution

BioCam
and
claude
committed
Integrate no-go zone channel distribution into LiquidHandler

BioCam
and
claude
committed
Add no-go zones to Hamilton 60mL and 120mL troughs

BioCam
and
claude
committed
Add tests for no-go zone compartment distribution

BioCam
and
claude
committed
Add container no-go zones investigation notebook

BioCam
and
claude
committed
make format

BioCam
and
claude
committed
normalize no_go_zones deserialization to tuples, extract `_compute_spread_offsets` helper
BioCam
committed
normalize no_go_zones deserialization, validate channel_spacings length, add integration tests
BioCam
committed
Merge branch 'PyLabRobot:main' into create-no_go_zones
BioCam
authored
improve notebook: header standard, narrative flow, channel diameter circles, remove raw command output
BioCam
committed
add empirical data for Hamilton troughs
BioCam
committed
make no_go_zones respect spread mode (wide/tight) within compartments
BioCam
committed
Update pylabrobot/liquid_handling/utils.py

BioCam
and
Copilot
authored
Update pylabrobot/resources/hamilton/troughs.py

BioCam
and
Copilot
authored
Update pylabrobot/resources/container.py

BioCam
and
Copilot
authored
Merge branch 'main' into create-no_go_zones
BioCam
authored
address PR review - spacing_idx bug, spread validation, wide per-gap distribution, raise on fit failure
BioCam
committed
add type narrowing asserts for mypy in container_tests
BioCam
committed
simplify into independent `compute_channel_offsets`
BioCam
committed
refactor: consolidate channel positioning into compute_channel_offsets, deprecate old functions
BioCam
committed

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Add container no-go zones with spread-aware channel distribution#953

Add container no-go zones with spread-aware channel distribution#953
BioCam wants to merge 31 commits intoPyLabRobot:mainfrom
BioCam:create-no_go_zones

Commits on Mar 23, 2026

Add no_go_zones attribute to Container and all subclasses

Add compartment utilities for no-go zone channel distribution

Integrate no-go zone channel distribution into LiquidHandler

Add no-go zones to Hamilton 60mL and 120mL troughs

Add tests for no-go zone compartment distribution

Add container no-go zones investigation notebook

make format

normalize no_go_zones deserialization to tuples, extract `_compute_spread_offsets` helper

normalize no_go_zones deserialization, validate channel_spacings length, add integration tests

Merge branch 'PyLabRobot:main' into create-no_go_zones

improve notebook: header standard, narrative flow, channel diameter circles, remove raw command output

add empirical data for Hamilton troughs

make no_go_zones respect spread mode (wide/tight) within compartments

Update pylabrobot/liquid_handling/utils.py

Update pylabrobot/resources/hamilton/troughs.py

Update pylabrobot/resources/container.py

Merge branch 'main' into create-no_go_zones

address PR review - spacing_idx bug, spread validation, wide per-gap distribution, raise on fit failure

add type narrowing asserts for mypy in container_tests

simplify into independent `compute_channel_offsets`

refactor: consolidate channel positioning into compute_channel_offsets, deprecate old functions

Commits on Mar 24, 2026

Merge branch 'main' into create-no_go_zones

wip: per-channel spacing model, proportional compartment assignment, cross-compartment gap validation pending

cross-compartment gap enforcement, centered edge margins, distance annotations in notebook

fix: occupancy diameter model (sum of radii), decouple STAR firmware max() from positioning half-sum

fix: radius-aware edge clearance, remove post-hoc enforcement, cross-compartment validation

add TODO for handling LHs like OT2

fix: reverse back-to-front spacings to front-to-back for compartment assignment, fix doc todo directive

Merge branch 'main' into create-no_go_zones

Commits on Mar 26, 2026

Merge branch 'main' into create-no_go_zones

Merge branch 'main' into create-no_go_zones