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nextstrain exclude.txt file is a good lead on problematic genomes to investigate

Status: Open.

#18 In PoonLab/sam2conseq;

· ArtPoon opened on May 17, 2020

Sam2conseq script will report "N" instead of majority consensus

Status: Open.

#17 In PoonLab/sam2conseq;

· ewong347 opened on Apr 28, 2020

Try replacing dict with list

Status: Open.

#16 In PoonLab/sam2conseq;

· ArtPoon opened on Apr 20, 2020

Analysis of SRR11241255

Status: Open.

#14 In PoonLab/sam2conseq;

· ArtPoon opened on Apr 13, 2020

bowtie2 with local alignment soft-clips nt difference at end of genome

Status: Open.

#10 In PoonLab/sam2conseq;

· ArtPoon opened on Apr 7, 2020

Refactor merge_pairs

Status: Open.

#4 In PoonLab/sam2conseq;

· ArtPoon opened on Mar 30, 2020