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Changes made

  • Fixed linting issue
  • Wrote tests
  • Added new file format to file_formats.md
  • Updated CHANGELOG.md

Added support for timsTOF by allowing model runner to take in a .d directory
…ixed directory discovery

Changes made
- Fixed the linting
- Added test for new functionality
- Changed file_formats.md to add .d folder type
- Added changes to CHANGELOG.md
@bhavyak7-lab bhavyak7-lab marked this pull request as draft November 12, 2025 18:47
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codecov bot commented Nov 12, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.62%. Comparing base (c60e7ec) to head (2cabd77).
⚠️ Report is 1 commits behind head on dev.

Additional details and impacted files
@@            Coverage Diff             @@
##              dev     #555      +/-   ##
==========================================
+ Coverage   94.28%   94.62%   +0.33%     
==========================================
  Files          14       14              
  Lines        1487     1487              
==========================================
+ Hits         1402     1407       +5     
+ Misses         85       80       -5     

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@bhavyak7-lab bhavyak7-lab marked this pull request as ready for review November 12, 2025 22:34
@bittremieux bittremieux self-requested a review December 9, 2025 17:11
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This looks good, thanks @bhavyak7-lab. We'll wait a bit longer to merge it into dev because there needs to be a new release of DepthCharge first, which we'll need to specify in the dependencies then.

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3 participants