Update badger db

[olegrok]

This patch updates dependencies in general but the main change is updating badgerdb to this branch: https://github.com/NilFoundation/badger/tree/nil

[Copilot]

Pull Request Overview

This PR updates the Go toolchain in Nix and bumps a wide range of module dependencies, with the primary goal of replacing the upstream BadgerDB v4 dependency with the NilFoundation fork.

• Switch Nix from buildGo124Module to buildGoLatestModule and update the vendored hash.
• Remove the override for gopls in Nix.
• Bump Go directive and toolchain in go.mod and update many dependency versions, including a replace for badger/v4 to the NilFoundation branch.

Reviewed Changes

Copilot reviewed 2 out of 4 changed files in this pull request and generated no comments.

File	Description
nix/nil.nix	Switched from buildGo124Module to buildGoLatestModule, updated vendorHash, and adjusted the gopls override.
go.mod	Changed go directive and added toolchain, replaced BadgerDB import, and bumped numerous module versions.

Comments suppressed due to low confidence (2)

nix/nil.nix:81

• [nitpick] The gopls package is no longer wrapped with overrideBuildGoModule, which the other Go tools use to enforce the buildGoLatestModule builder. Consider reapplying overrideBuildGoModule to gopls to maintain a consistent Go version and build flags.

    gopls

go.mod:3

• The go directive typically specifies only major and minor versions (e.g., go 1.24). Using a patch version like 1.24.0 is unconventional and may not be recognized; consider reverting this to go 1.24.

go 1.24.0

[dmtrskv]

Why did biome files change?

[olegrok]

Why did biome files change?

New major version of biome is delivered with new nixpkgs version