Use this branch to profile#21
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…able easy integration of GPU kernels
…into gpu_kernel
Integrate stand alone gpu kernels
Restructure minimap2 code for batched chaining
…into gpu_kernel
…into gpu_kernel-break
…into gpu_kernel-break
…into gpu_kernel-break
Add long segment aggregation. Cleaned up code for sysbio submission. TODO: Add README
…ile, aac is very slow right now in loading data, so please allocate more time
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Update profile script please use scripts/acc_integrated.slurm to profile, aac is very slow right now in loading data, so please allocate more time