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12 changes: 11 additions & 1 deletion README.md
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[![Deploy to GitHub Pages](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml/badge.svg)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml)
[![GitHub last commit](https://img.shields.io/github/last-commit/MPUSP/mpusp-github-io)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml)

A homepage for the bioionformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](mpusp.mpg.de)).
A homepage for the bioinformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](www.mpusp.mpg.de)).
This website is built using [Docusaurus](https://docusaurus.io/), a modern static website generator.
All data to render the less-static parts of the website (repo and user stats) are retrieved from Github using API requests.
The website is automatically updated and built once per week, and on pull requests to the `main` branch.
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```

This command generates static content into the `build` directory and can be served using any static contents hosting service.

### References

This page is loosely inspired by the [`conda-forge` homepage](https://conda-forge.org/), which is also built with Docusaurus and [hosted on Github](https://github.com/conda-forge/conda-forge.github.io):

> conda-forge community. (2015). The conda-forge Project: Community-based Software Distribution Built on the conda Package Format and Ecosystem [Computer software]. https://doi.org/10.5281/zenodo.4774216

Some functionality and design choices were inspired by the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/), which is co-maintained by Michael Jahn ([jahn@mpusp.mpg.de](https://github.com/m-jahn))

> Koester, J., & Jahn, M. (2025). Snakemake Workflow Catalog (Version 1.0.0) [Computer software]. https://github.com/snakemake/snakemake-workflow-catalog
2 changes: 1 addition & 1 deletion docs/projects/intro.md
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## Core competences

- Data acquisition: study and experimental design, analysis strategies, data transfer and stoprage
- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/workflows), all of them featuring rich quality control (QC) functions
- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/docs/workflows/workflow_overview), all of them featuring rich quality control (QC) functions
- Data analysis and visualization: One of our most important tasks; We handle primarily short and long read sequencing data for all types of genomics and transcriptomics. Many of our workflows are specially suited for microbial data.
- Data deposition and sharing: We strive to annotate and deposit all relevant biological data on free and publicly accessible platforms, such as ENA (European Nucleotide Archive) or NCBI's SRA service.
- Reproducible workflows: We deposit all of our scientific tools and workflows on (https://github.com/MPUSP), with a growing number of repositories being public and freely available under the MIT license.
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4 changes: 3 additions & 1 deletion docs/projects/projects/SpyViewer.md
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sidebar_position: 1
---

# SpyViewer
# Project 1

This is a place holder. More information coming soon!
6 changes: 4 additions & 2 deletions docs/projects/projects/small_orfs.md
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---
sidebar_position: 1
sidebar_position: 2
---

# Small ORFs
# Project 2

This is a place holder. More information coming soon!
2 changes: 1 addition & 1 deletion docusaurus.config.js
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},
{ to: "/blog", label: "News", position: "left" },
{
href: "https://mpusp.mpg.de",
href: "https://www.mpusp.mpg.de",
label: "MPUSP",
position: "right",
},
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