IsoformSwitchAnalyzeR is an R package to Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
While the package is created and maintained by the Isoform Analysis Group the package is, due to the rich history with solved isssues, kept on Kristoffers Github: https://github.com/kvittingseerup/IsoformSwitchAnalyzeR