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Inconsistency in ancombc2 help regarding argument pseudo

Status: Open.

#326 In FrederickHuangLin/ANCOMBC;

· migfejo opened on Dec 9, 2025

task 3 failed - "Zero variances have been detected for the following taxa:

Status: Open.

#325 In FrederickHuangLin/ANCOMBC;

· elenagallina1 opened on Dec 9, 2025

Bug: ancombc2() fails with "variable not in meta data" when meta_data has only one column

Status: Open.

#324 In FrederickHuangLin/ANCOMBC;

· SATERIAJIAYING opened on Nov 12, 2025

Contrasts error with lmerTest, but when run on individual ASVs the lmerTest works

Status: Open.

#323 In FrederickHuangLin/ANCOMBC;

· satkinson0115 opened on Oct 2, 2025

rbind warning

Status: Open.

#321 In FrederickHuangLin/ANCOMBC;

· samuelbloomfield opened on Sep 15, 2025

How to compare specific pairwise contrasts for lfc and heatmap (without reference group)? 6 treatment groups, to compare 3 pairs

Status: Open.

#320 In FrederickHuangLin/ANCOMBC;

· suminayeoh opened on Aug 17, 2025

ANCOM-BC2 returns ASV and not Genus despite argument "rank = "Genus"

Status: Open.

#319 In FrederickHuangLin/ANCOMBC;

· gkuhlenbaum opened on Jul 23, 2025

ISSUE ancombc2 version 2.11.1

Status: Open.

#318 In FrederickHuangLin/ANCOMBC;

· CLacomme opened on Jul 14, 2025

Problem with setting fix and rand formulas

Status: Open.

#317 In FrederickHuangLin/ANCOMBC;

· joanaseneca opened on Jul 3, 2025

SECOM Error: non-conformable arrays

Status: Open.

#316 In FrederickHuangLin/ANCOMBC;

· BKretzler opened on Jun 17, 2025

Different number of significant DA taxa when changing reference

Status: Open.

#315 In FrederickHuangLin/ANCOMBC;

· AbelSILLY opened on Jun 17, 2025

Problem understanding formulas in the paper

Status: Open.

#314 In FrederickHuangLin/ANCOMBC;

· AbelSILLY opened on Jun 4, 2025