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1. Polymerase-checker Polymerase-checker Public

   Modular Python pipeline for identifying RNA Polymerase IV (NRPD1) orthologs in plant genomes. Features BLAST+ integration, custom domain analysis, and a JSON-configurable rule-based validation syst…

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2. First First Public

   Day-one guide for bioinformatics: essential Linux commands, R, SQL, Python functions for genomics (FASTA, BED, BAM, BLAST), and full environment setup (Git, SSH, Conda, VS Code). Everything you nee…

3. git git Public

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4. Pred_TF_cancer Pred_TF_cancer Public

   Predicting CEBPB transcription factor binding from TCGA NGS data across 23 cancer types using MaxATAC. Includes full preprocessing, normalization, peak calling, and downstream analysis pipeline.

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5. cryo-em-3d-reconstruction cryo-em-3d-reconstruction Public

   Complete cryo-EM Single Particle Analysis (SPA) pipeline: from raw particle images to 3D reconstruction. Includes particle picking, 2D/3D classification, angular reconstitution, iterative refinemen…

6. aipc-tomography-spike-analysis aipc-tomography-spike-analysis Public

   Cryo-electron tomography (cryo-ET) pipeline for viral spike structure analysis. Includes tilt-series alignment (IMOD), tomogram reconstruction, particle picking, subtomogram averaging with C3 symme…