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Implement A la carte updating of JGI data

documentationdocumentationdocumentation

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In ELIFE-ASU/ecg;

· colemathis opened on Dec 14, 2023

JGI Requires Chromedriver

bugSomething isn't workingSomething isn't working

documentationdocumentationdocumentation

Status: Open.

#29 In ELIFE-ASU/ecg;

· colemathis opened on Sep 26, 2022

Fix metagenome JGI scraping

bugSomething isn't workingSomething isn't working

Status: Open.

#21 In ELIFE-ASU/ecg;

· hbsmith opened on Nov 26, 2019

add ability to make KEGG graph and reaction list directly (no jgi jsons required)

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In ELIFE-ASU/ecg;

· hbsmith opened on Nov 26, 2019

Fix full_url to correctly save as a url

Status: Open.

#16 In ELIFE-ASU/ecg;

· bxk334 opened on Aug 31, 2019

Change CLI from docopt to argparse

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In ELIFE-ASU/ecg;

· hbsmith opened on Aug 15, 2019

move CLI out of kegg.py, jgi.py, ecg.py and into script/ecg.py

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In ELIFE-ASU/ecg;

· hbsmith opened on Aug 15, 2019

Add ability to read in a json of organism_urls from command line

enhancementNew feature or requestNew feature or request

Status: Open.

#10 In ELIFE-ASU/ecg;

· hbsmith opened on Jul 24, 2019

Add method to update data from a JGI domain

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In ELIFE-ASU/ecg;

· hbsmith opened on Jul 24, 2019

raising warning before scraping causes multiple tqdm bars in jupyter

bugSomething isn't workingSomething isn't working

Status: Open.

#8 In ELIFE-ASU/ecg;

· hbsmith opened on Jul 23, 2019

Provide shorter version of options in CLI

enhancementNew feature or requestNew feature or request

Status: Open.

#7 In ELIFE-ASU/ecg;

· thyamu opened on Jul 18, 2019

ADD more information for the progress bars for downloading KEGG and other db

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In ELIFE-ASU/ecg;

· thyamu opened on Jul 18, 2019