Issues · CancerDataAggregator/transform · GitHub

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ETL harmonization logic: identify feasibility: remove all 'NOS' suffixes as part of top-level sweep?

#144

· abradyGDIT opened

on Oct 7, 2025

Make any bespoke harmonization logic more prominent than it currently is

#143

· abradyGDIT opened

on Oct 7, 2025

Transform: wrap all PDC data writes with `json.dumps().strip(/["']/)`

#142

· abradyGDIT opened

on Oct 7, 2025

Evaluate availability and prototype extraction method for Clinical Trials (CTDC) GraphQL API

#141

· abradyGDIT opened

on Oct 7, 2025

Add nested IDC `dicom_all` columns used by CDA ETL to column-value counters

#140

· abradyGDIT opened

on Oct 7, 2025

Fully document CDA cross-DC `subject` aggregation logic for external sharing

#139

· abradyGDIT opened

on Oct 7, 2025

If GC `study.funding_source_program_name` is useful, add to ETL ingest

#138

· abradyGDIT opened

on Oct 7, 2025

Add sum(s?) of file sizes to `release_metadata` cache

#137

· abradyGDIT opened

on Oct 7, 2025

Check potential utility for CDA ETL of pairing GC's `sample.sample_description` and `diagnosis.disease_type`

#136

· abradyGDIT opened

on Oct 7, 2025

Automate export of CDA data model to various interop formats for sharing

#134

· abradyGDIT opened

on Oct 7, 2025

Exhaustively explore explicit cross-references stored at DCs, compare to CDA's conclusions, and expand CDA ETL to ingest xrefs if useful

#133

· abradyGDIT opened

on Oct 7, 2025

Check PDC `Sample`<->`Diagnosis` relation to see if anything can be used for CDA ETL that isn't already ingested from other structures

#132

· abradyGDIT opened

on Oct 7, 2025