Popular repositories Loading

1. snp-pipeline snp-pipeline Public

   SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.

   Python 65 33

2. C-WAP C-WAP Public

   SC2 variant detection and composition pipeline

   HTML 17 8

3. shigatyper shigatyper Public

   CFSAN Shigella Typing Pipeline

   Python 15 7

4. vcftoolz vcftoolz Public

   Tools for working with Variant Call Format files.

   Python 12 5

5. bettercallsal bettercallsal Public

   Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

   Nextflow 12 2

6. snp-mutator snp-mutator Public

   Generate mutated sequence files from a reference genome.

   Python 11 5