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Ensure that first synteny block has reason "None" #91

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Merged
lcoombe merged 1 commit into from
Jun 2, 2026
Merged

Ensure that first synteny block has reason "None" #91

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1 change: 1 addition & 0 deletions bin/ntsynt_synteny.py
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Original file line number Diff line number Diff line change
Expand Up @@ -455,6 +455,7 @@ def merge_collinear_blocks(self, blocks):
"Merge collinear blocks that are less than threshold apart, and are not indels"
out_blocks = []
curr_block = blocks[0]
curr_block.broken_reason = None
for block in blocks[1:]:
orientations = True # Are the orientations all the same?
contig_id = True # Are the contig IDs all the same?
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