ntHash3: otherwise known as BiHash#140

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jwong-1 wants to merge 56 commits into

Commits on Apr 20, 2026

working mechanic bshash

jowong04
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seq.hpp: add bisulfite conversion utility declaration

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seq.cpp: add bisulfite conversion utility definition

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Update seq.hpp

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Update seq.cpp

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Update seq.cpp

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update seq

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update working version

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final bshash directional: pre name change and additional test and refactor

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bshash_conversion: odd number of dimer version

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renamed files

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bshash_conversion: final version

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azure-pipelines.yml: pin cmake

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azure-pipelines.yml: pin meson and ninja

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bshash: hashing internals

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bshash test: spacing fixed

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seq: add comment and fixed spacing bs conversion utility

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nthash: tidy up changes and made spacing

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bshash: spacing changes

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mi_bloom_filter.cpp: fix compilation error

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seq.cpp: add bs conversion tests

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seq.cpp: fix const bug

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seq.hpp: fix const bug

jwong-1
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Update mi_bloom_filter.cpp

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Update mi_bloom_filter.cpp

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mi_bloom_filter.cpp: clang-format

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Update meson.build

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seq.cpp: fix test case

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azure-pipelines.yml: unpin cmake

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azure-pipelines.yml: repin cmake and unpin ninja

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azure-pipelines.yml: upgrade meson

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azure-pipelines.yml: unpin cmake

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azure-pipelines.yml: pin cmake

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bshash_hashing_internals.hpp: remove log information

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bshash_hashing_internals.hpp: clang-format

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bshash_kmer.hpp: use string_view

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bshash_kmer.hpp: fix condition

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bshash_kmer: fix boundaries and init conditions

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two alphabet mode
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two alphabet mode header
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bshash fix variable name
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bshash fix constructor
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Update bshash_kmer_bi.hpp

jwong-1
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clang-format
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Update bshash_kmer_bi.hpp

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Update bshash_bi.cpp

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Update bshash_kmer_bi.hpp

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Update bshash_kmer_bi.hpp

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use unbalanced seeds for 2 hash
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clang-format
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Update bshash_kmer.hpp
jwong-1
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Update bshash_kmer_bi.hpp
jwong-1
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clean up bshash_bi.cpp
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Update bshash_directional.cpp
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renamed files
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added doxygen docs
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