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@AnacletoLAB

AnacletoLab

Computational Biology and Bioinformatics Lab - Dept. of Computer Science - UNIMI

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  1. grape grape Public

    🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

    Jupyter Notebook 615 39

  2. ensmallen ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    Python 40 14

  3. RNA-KG RNA-KG Public

    Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.

    Jupyter Notebook 27 2

  4. sHAM sHAM Public

    Compact representations of convolutional neural networks via weight pruning and quantization

    Python 9 3

  5. parSMURF parSMURF Public

    High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants

    Python 7 2

  6. epigenomic_dataset epigenomic_dataset Public

    Python package wrapping ENCODE epigenomic data for a number of reference cell lines.

    Jupyter Notebook 6 1

Repositories

Showing 10 of 29 repositories
  • Bioinformatics_practice Public

    Project assignment for the Bioinformatics Master Course

    AnacletoLAB/Bioinformatics_practice’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 13, 2025
  • miRInter-Trans Public

    A transformer-based model to predict micro RNA interactions

    AnacletoLAB/miRInter-Trans’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Nov 4, 2025
  • schemalink-docs Public

    Source code for the documentation website of the Schemalink project

    AnacletoLAB/schemalink-docs’s past year of commit activity
    Ruby 0 CC0-1.0 0 0 0 Updated Nov 4, 2025
  • ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    AnacletoLAB/ensmallen’s past year of commit activity
    Python 40 MIT 14 10 1 Updated Sep 29, 2025
  • RNA_m5C_predict Public

    Deep‑learning inference for cytosine 5‑methylation in Human RNA sequences

    AnacletoLAB/RNA_m5C_predict’s past year of commit activity
    Python 0 0 0 0 Updated Sep 23, 2025
  • RNA-KG Public

    Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering, and link prediction.

    AnacletoLAB/RNA-KG’s past year of commit activity
    Jupyter Notebook 27 Apache-2.0 2 0 0 Updated Sep 12, 2025
  • ncRNA-CUPID Public

    ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)

    AnacletoLAB/ncRNA-CUPID’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Jul 3, 2025
  • grape_helper_lib Public

    Collection of function to improve GRAPE functionality

    AnacletoLAB/grape_helper_lib’s past year of commit activity
    Python 0 0 0 0 Updated May 28, 2025
  • mosclust Public

    Stability based methods for model order selection in clustering problems.

    AnacletoLAB/mosclust’s past year of commit activity
    R 0 0 0 0 Updated May 23, 2025
  • clusterv Public

    The clusterv R package implements a set of functions to assess the reliability of clusters discovered by clustering algorithms.

    AnacletoLAB/clusterv’s past year of commit activity
    R 0 0 0 0 Updated May 12, 2025

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