robust-pride-client/setup.py at main · webwebb56/robust-pride-client · GitHub

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#!/usr/bin/env python3
"""
Setup configuration for robust-pride-client
"""

from setuptools import setup, find_packages
from pathlib import Path

# Read README for long description
this_directory = Path(__file__).parent
long_description = (this_directory / "README.md").read_text(encoding='utf-8')

# Read requirements
requirements = []
if (this_directory / "requirements.txt").exists():
    requirements = (this_directory / "requirements.txt").read_text().strip().split('\n')

setup(
    name="robust-pride-client",
    version="1.0.0",
    author="Andrew White",
    author_email="andrew@omnigraph.ai",
    description="Bullet-proof, dead-simple downloads from the PRIDE proteomics database",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/webwebb56/robust-pride-client",
    packages=find_packages(),
    classifiers=[
        "Development Status :: 4 - Beta",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
        "Operating System :: OS Independent",
    ],
    python_requires=">=3.8",
    install_requires=requirements,
    extras_require={
        "dev": [
            "pytest>=6.0",
            "pytest-cov",
            "black",
            "flake8",
            "mypy",
            "pre-commit",
        ],
        "docs": [
            "sphinx",
            "sphinx-rtd-theme",
            "myst-parser",
        ],
    },
    entry_points={
        "console_scripts": [
            "pride-download=pride_client.cli:download_cli",
            "pride-config=pride_client.cli:config_cli",
            "pride-search=pride_client.cli:search_cli",
        ],
    },
    keywords=[
        "proteomics",
        "mass-spectrometry",
        "pride",
        "data-download",
        "bioinformatics",
        "research-tools"
    ],
    project_urls={
        "Bug Reports": "https://github.com/webwebb56/robust-pride-client/issues",
        "Source": "https://github.com/webwebb56/robust-pride-client",
        "Documentation": "https://robust-pride-client.readthedocs.io",
    },
    include_package_data=True,
    zip_safe=False,
)