Compile error

[haucky]

Hey,
i also got stuck in the compile process and can't find any solution.
the compiling works till 47%, and then the error output
I have done everything according the description and loaded lib/boost/1.56.0 (working on a cluster)
I would be very glad I you could give me a hint, what to do next.
Warm regards

-----|cmake ..|

-- The C compiler identification is GNU 4.4.7
-- The CXX compiler identification is GNU 4.4.7
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
Boost found.
Found Boost components:
program_options;system;filesystem
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/build

-----|make|

[...%]
[ 34%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
[ 35%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
[ 36%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
[ 37%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
[ 39%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
[ 40%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
[ 41%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
[ 42%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
[ 43%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
[ 45%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
[ 46%] Building CXX object lib/bamtools/src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
Linking CXX shared library libbamtools.so
[ 46%] Built target BamTools
Scanning dependencies of target FRC
[ 47%] Building CXX object CMakeFiles/FRC.dir/src/FRC_align.cpp.o
In file included from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/data_structures/Contig.h:17,
from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/data_structures/FRC.h:20,
from /home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/FRC_align.cpp:35:
/home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/common.h: In function ‘LibraryStatistics computeLibraryStats(std::string, uint64_t, uint32_t, bool)’:
/home/fr/fr_fr/fr_ch222/ProgrammData/FRC_align/src/common.h:215: error: ‘struct std::basic_string<char, std::char_traits, std::allocator >’ has no member named ‘string’
make[2]: *** [CMakeFiles/FRC.dir/src/FRC_align.cpp.o] Error 1
make[1]: *** [CMakeFiles/FRC.dir/all] Error 2
make: *** [all] Error 2

[sunnvor]

Hi,

Did you find a solution for this? I get the same error.

[sunnvor]

Never mind. Found out what the problem was. I was using an old version of Boost.

[vezzi]

Hi, thanks for using this software. Most likely the problems are due to how boost is installed. In my todo list there is the task to remove boost dependency for FRCbam....