Hello, I recently run ERNE(v.2.1.1). This is my script.
erne-map --reference ref.fasta.ebh --threads 4 --output simulate.bam --query1 simulate_100_200_1.fq.gz
Alignment successfully finished!
::: Statistics :::
Walltime: 29s => reads per second: 38032
But when I add --query2 for PE data, the program stopped in alignment without any wrong or exiting, which is sleeping for a long time in cup process.
erne-map --reference ref.fasta.ebh --threads 4 --output simulate.bam --query1 simulate_100_200_1.fq.gz --query2 simulate_100_200_2.fq.gz
Starting alignment ...
0% done ...
0.1% done ...
0.2% done ...
0.3% done ...
0.4% done ...
0.5% done ...
0.6% done ...
0.7% done ...
0.8% done ...
0.9% done ...
Hello, I recently run ERNE(v.2.1.1). This is my script.
erne-map --reference ref.fasta.ebh --threads 4 --output simulate.bam --query1 simulate_100_200_1.fq.gz
Alignment successfully finished!
::: Statistics :::
Walltime: 29s => reads per second: 38032
But when I add --query2 for PE data, the program stopped in alignment without any wrong or exiting, which is sleeping for a long time in cup process.
erne-map --reference ref.fasta.ebh --threads 4 --output simulate.bam --query1 simulate_100_200_1.fq.gz --query2 simulate_100_200_2.fq.gz
Starting alignment ...
0% done ...
0.1% done ...
0.2% done ...
0.3% done ...
0.4% done ...
0.5% done ...
0.6% done ...
0.7% done ...
0.8% done ...
0.9% done ...