stringmol/TODO.md~ at dev · uoy-research/stringmol · GitHub

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#Testing and Refactoring

Stringmol is research code, but the time has come to improve its organisation.
We need to standardise parameter loading on the following run types:

* 0: 1 on 1
* 1: ALife XII
* 2: Con pop
* 4: Comass GA

##Parameters

These are the values that are used in the config files (missing parameters are standardised already)

###RANDSEED

* 0: not set (might be needed though!)
* 1: initmyrand(-1) sets rseed
* 2: longinitmyrand() based on seedin sets rseed
* 4: longinitmyrand() based on seedin sets rseed

###NSTEPS / MAXNSTEPS

* 0: arg_load() sets A.nsteps
* 1: readordef_param_int() sets maxnsteps
* 2: A[0]->nsteps is set, but not used; MAXCONSTEPS is a hard coded const, value 10,000,000
* 4: setupSMol() sets R.maxnsteps using read_param_int()


###NTRIALS

* 0: not set
* 1: readordef_param_int() sets rlim
* 2: not needed (?)
* 4: not needed (always 1)

###GAQNN

* 0: not needed
* 1: not needed
* 2: not needed
* 4: read_param_int

###GRANULAR

_This is used for the `granular_SM' experiment in the ALife Journal paper

* 0: not set
* 1: readordef_param_int() sets A.granular_1
* 2: not set
* 4: not set


###NCON

* 0: not needed
* 1: not needed
* 2: NCON initialised to 4, then read_param_int("NCONTAINERS")
* 4: not needed (but similar to popsize)