[E5-F6] Generate implementation issues for Documentation and Examples

[Gorkowski]

Dependencies:

#1115 [E5-F1] ──┐
#1116 [E5-F2] ──┤
#1117 [E5-F3] ──┼──► #THIS [E5-F6]
#1118 [E5-F4] ──┤
#1119 [E5-F5] ──┘

Summary

Generate implementation issues for feature E5-F6: Documentation and Examples.

Complete documentation for the non-isothermal condensation feature: sweep all new code for docstring gaps, add a Theory document explaining the non-isothermal mass transfer derivation, create a usage example notebook demonstrating all three latent heat strategies and comparing isothermal vs non-isothermal growth, and update development plan documentation with final status.

Feature Plan

Document: adw-docs/dev-plans/features/E5-F6-documentation-examples.md

Parent Epic: E5: Non-Isothermal Condensation with Latent Heat (adw-docs/dev-plans/epics/E5-non-isothermal-condensation.md)

Phases to Generate

Phase	Description	Size
E5-F6-P1	Add docstrings and Theory document update	S (~60 LOC)
E5-F6-P2	Create usage example notebook	M (~100 LOC)
E5-F6-P3	Update development documentation	XS (~20 LOC)

Dependencies

• Blocked by: [E5-F1] [E5-F1] Generate implementation issues for Latent Heat Strategy Pattern #1115, [E5-F2] [E5-F2] Generate implementation issues for Non-Isothermal Mass Transfer Functions #1116, [E5-F3] [E5-F3] Generate implementation issues for CondensationLatentHeat Strategy Class #1117, [E5-F4] [E5-F4] Generate implementation issues for Builder, Factory, and Exports #1118, [E5-F5] [E5-F5] Generate implementation issues for Validation and Integration Tests #1119 — all implementation and validation must be complete before documentation sweep
• Also leverages: Jupytext tooling for notebook sync, mkdocs for documentation builds
• Blocks: None (final documentation feature)

ADW Instructions

When processing this issue:

1. Read the feature plan document: adw-docs/dev-plans/features/E5-F6-documentation-examples.md
2. Read the parent epic for context: adw-docs/dev-plans/epics/E5-non-isothermal-condensation.md
3. For each phase in the Phase Checklist (E5-F6-P1 through E5-F6-P3), create an implementation issue with:
   • Full technical details from the feature plan
   • Specific file paths from the feature plan's scope section
   • Test file paths (co-located in module tests/ directories)
   • Co-located testing: tests ship with implementation in every phase
   • Coverage target: 80-85% per phase
4. Set dependency chain: E5-F6-P1 → E5-F6-P2 → E5-F6-P3
5. Label all phases with agent, blocked, type:complete, model:default

Files to Create/Modify

• Modify: All new source files from E5-F1 through E5-F4 — docstring gap sweep
• Create or Update: docs/Theory/Technical/Dynamics/Condensation_Equations.md — non-isothermal mass transfer derivation
• Create: docs/Examples/Dynamics/non_isothermal_condensation_example.py — py:percent format usage example
• Create: docs/Examples/Dynamics/non_isothermal_condensation_example.ipynb — synced notebook (via Jupytext)
• Modify: adw-docs/dev-plans/README.md — epic status update
• Modify: adw-docs/dev-plans/epics/index.md — epic index update
• Modify: adw-docs/dev-plans/features/index.md — feature index update

Testing Strategy

Documentation Validation

Check	Tool	Phase
Docstring format	ruff check particula/ --fix + ruff format	P1
Theory document links	Manual review + mkdocs build	P1
Notebook execution	run_notebook tool	P2
Notebook sync	validate_notebook --sync	P2
Dev-plan links	Manual review	P3

Notebook Test Cases

1. Strategy demos: Each latent heat strategy produces expected output
2. Comparison plot: Isothermal vs non-isothermal curves visually distinct
3. Energy tracking: last_latent_heat_energy attribute accessible and non-zero for L > 0
4. Cloud activation: Water droplet grows at reduced rate with non-isothermal correction
5. No internal imports: Only import particula as par and submodules

Literature Citations to Include

• Topping & Bane (2022) Eq. 2.36
• Seinfeld & Pandis (2016) Eq. 13.3
• Rogers & Yau (1989) Ch. 7