From 1bb813ae7d15e2f5e091a6fbb3395eb471c9c956 Mon Sep 17 00:00:00 2001 From: avantol Date: Tue, 19 May 2026 14:21:27 -0500 Subject: [PATCH 1/6] feat(embeddings): initial SDK/CLI support for embeddings Co-authored-by: Copilot --- gen3/ai.py | 279 +++ gen3/cli/__main__.py | 23 +- gen3/cli/ai/embeddings.py | 475 +++++ gen3/cli/ai/embeddings_collections.py | 107 + gen3/cli/ai/main.py | 94 + gen3/cli/ai/utils.py | 122 ++ gen3/cli/auth.py | 2 +- gen3/cli/discovery.py | 2 +- gen3/cli/drs_pull.py | 2 +- gen3/cli/file.py | 2 +- gen3/cli/nih.py | 4 +- gen3/cli/objects.py | 2 +- gen3/cli/pfb.py | 2 +- gen3/cli/users.py | 2 +- gen3/cli/wss.py | 2 +- poetry.lock | 2600 ++++++++++++++++++++++++- pyproject.toml | 11 +- tests/conftest.py | 30 +- tests/embeddings_tests/README.md | 5 + tests/embeddings_tests/test_expr.tsv | 4 + tests/embeddings_tests/test_hist.tsv | 4 + tests/embeddings_tests/test_summ.tsv | 4 + tests/test_cli_ai_collections.py | 102 + tests/test_cli_ai_embeddings.py | 152 ++ 24 files changed, 3925 insertions(+), 107 deletions(-) create mode 100644 gen3/ai.py create mode 100644 gen3/cli/ai/embeddings.py create mode 100644 gen3/cli/ai/embeddings_collections.py create mode 100644 gen3/cli/ai/main.py create mode 100644 gen3/cli/ai/utils.py create mode 100644 tests/embeddings_tests/README.md create mode 100644 tests/embeddings_tests/test_expr.tsv create mode 100644 tests/embeddings_tests/test_hist.tsv create mode 100644 tests/embeddings_tests/test_summ.tsv create mode 100644 tests/test_cli_ai_collections.py create mode 100644 tests/test_cli_ai_embeddings.py diff --git a/gen3/ai.py b/gen3/ai.py new file mode 100644 index 000000000..2fdc76b11 --- /dev/null +++ b/gen3/ai.py @@ -0,0 +1,279 @@ +import logging +from typing import Any + +import backoff +import httpx +from cdislogging import get_logger + +from gen3.auth import Gen3Auth +from gen3.utils import DEFAULT_BACKOFF_SETTINGS + +logger = get_logger("__name__") + + +class EmbeddingsClient: + """ + Client for interacting with the gen3_embeddings API. + + For local: + + ```python + auth = Gen3Auth(refresh_file="credentials.json") + embeddings_client = EmbeddingClient( + auth=auth, + endpoint="localhost:4143", + api_prefix="", + ) + ```` + + """ + + def __init__( + self, + auth: Gen3Auth, + endpoint: str | None = None, + api_prefix: str = "ai", + ): + """ + Initialize the embedding client. + """ + # prefer provided endpoint and fallback on one in creds + endpoint = endpoint or auth.endpoint or "" + endpoint = endpoint.strip("/") + + if not endpoint.endswith(api_prefix): + endpoint += "/" + api_prefix + + self.endpoint = endpoint.rstrip("/") + self._auth = auth + + def _get_headers(self) -> dict[str, str]: + """Get headers for API requests.""" + auth_token = self._auth.get_access_token() + + if not auth_token: + logger.warning(f"No auth token could be obtained.") + + headers = {} + if auth_token: + headers["Authorization"] = f"Bearer {auth_token}" + + return headers + + @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) + async def create_collection( + self, + collection_name: str, + dimensions: int, + description: str | None = None, + ) -> dict[str, Any]: + """ + Create a new vector collection. + + Args: + collection_name (str): Name of the collection to create + dimensions (int): Number of dimensions for embeddings + description (str): Optional description for the collection + + Returns: + Response from the API + + Raises: + httpx.HTTPError: If the request fails + """ + url = f"{self.endpoint}/vectorstore/collections" + payload = { + "collection_name": collection_name, + "dimensions": dimensions, + } + if description: + payload["description"] = description + + async with httpx.AsyncClient() as client: + response = await client.post( + url, + json=payload, + headers=self._get_headers(), + ) + response.raise_for_status() + return response.json() + + @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) + async def create_embeddings( + self, + collection_name: str, + embeddings_with_metadata: list[dict], + collection_id: int | None = None, + ai_model: str | None = None, + ) -> dict[str, Any]: + """ + Create and add embeddings to an existing collection. + + Args: + collection_name (str): Name of the collection to add embeddings to + embeddings_with_metadata (list[dict]): List of dictionaries containing the embedding and metadata + ai_model (str): Optional AI model name + + Returns: + Response from the API + + Raises: + httpx.HTTPError: If the request fails + """ + url = f"{self.endpoint}/vectorstore/collections/{collection_name}/embeddings" + params = {} + if ai_model: + params["ai_model"] = ai_model + + body = {"embeddings": embeddings_with_metadata} + + async with httpx.AsyncClient() as client: + response = await client.post( + url, + json=body, + params=params, + headers=self._get_headers(), + ) + response.raise_for_status() + return response.json() + + @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) + async def list_collections( + self, collection_name: str | None = None + ) -> list[dict[str, Any]]: + """ + List all vector collections. + + Args: + collection_name (str): optional collection_name to retrieve, if not provided will list all + + Returns: + List of collection information + + Raises: + httpx.HTTPError: If the request fails + """ + url = f"{self.endpoint}/vectorstore/collections" + if collection_name: + url += f"/{collection_name}" + + async with httpx.AsyncClient() as client: + response = await client.get(url, headers=self._get_headers()) + response.raise_for_status() + return response.json() + + @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) + async def list_embeddings( + self, + collection_name: str, + no_embeddings_info: bool = False, + ) -> list[dict[str, Any]]: + """ + List all embeddings in an collection. + + Args: + collection_name (str): Name of the collection + no_embeddings_info (bool): If True, omit info block in response to reduce payload size + + Returns: + List of embedding information + + Raises: + httpx.HTTPError: If the request fails + """ + url = f"{self.endpoint}/vectorstore/collections/{collection_name}/embeddings" + params = {} + if no_embeddings_info: + params["no_embeddings_info"] = "true" + + async with httpx.AsyncClient() as client: + response = await client.get(url, params=params, headers=self._get_headers()) + response.raise_for_status() + return response.json() + + @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) + async def delete_collection(self, collection_name: str) -> None: + """ + Delete a vector collection. + + Args: + collection_name (str): Name of the collection to delete + + Returns: + Response from the API + + Raises: + httpx.HTTPError: If the request fails + """ + url = f"{self.endpoint}/vectorstore/collections/{collection_name}" + + async with httpx.AsyncClient() as client: + response = await client.delete(url, headers=self._get_headers()) + response.raise_for_status() + + # 204 on success, so no body + return None + + +class LocalEmbeddingClient: + """ + Client for local embedding generation using sentence-transformers. + """ + + def __init__(self, model_name: str = "all-MiniLM-L6-v2"): + """ + Initialize the local embedding client. + + Args: + model_name (str): Name of the sentence-transformers model to use + """ + # lazy load. moved from top-level to avoid extensive loading at module load + # b/c we're lazy loading, we need to explicitly set the log level for this module + from sentence_transformers import SentenceTransformer + + logging.getLogger("sentence_transformers").setLevel(logger.level) + + self.model = SentenceTransformer(model_name) + self.dimensions = self.model.get_embedding_dimension() + logger.info(f"Loaded model: {model_name} (dimensions: {self.dimensions})") + + def embed( + self, + texts_with_metadata: list[dict], + keep_original_text: bool = True, + show_progress_bar: bool = False, + ) -> list: + """ + Generate embeddings for a list of texts. + + Args: + texts_with_metadata (list[dict]): List of text strings to embed w/ metadata + + Returns: + list of objects with embedding and metadata + """ + texts = [item["text"] for item in texts_with_metadata] + + embeddings = self.model.encode( + texts, convert_to_numpy=True, show_progress_bar=show_progress_bar + ).tolist() + + # we can only have an embedding with metadata in the final output, so + # if we need to keep the original text, move it to the metadata + if not keep_original_text: + for item in texts_with_metadata: + item["metadata"].update({"text": item["text"]}) + del item["text"] + + # this format should be what the JSON body for bulk creation of embeddings + # expects + embeddings_with_metadata = [ + { + "embedding": embedding, + "metadata": text_with_metadata["metadata"], + "authz": text_with_metadata.get("authz", ""), + } + for embedding, text_with_metadata in zip(embeddings, texts_with_metadata) + ] + + return embeddings_with_metadata diff --git a/gen3/cli/__main__.py b/gen3/cli/__main__.py index 5a51be11b..3a3d4be26 100644 --- a/gen3/cli/__main__.py +++ b/gen3/cli/__main__.py @@ -15,6 +15,7 @@ import gen3.cli.drs_pull as drs_pull import gen3.cli.users as users import gen3.cli.wrap as wrap +import gen3.cli.ai.main as ai import gen3 from gen3 import logging as sdklogging from gen3.cli import nih @@ -112,26 +113,39 @@ def main( ) # disables all logging logging.disable(logging.CRITICAL) + level = logging.NOTSET elif very_verbose_logs: + level = "DEBUG" logger = cdislogging.get_logger( __name__, format=gen3.LOG_FORMAT, log_level="debug" ) - sdklogging.setLevel("DEBUG") + sdklogging.setLevel(level) + elif verbose_logs: + level = "INFO" logger = cdislogging.get_logger( __name__, format=gen3.LOG_FORMAT, log_level="info" ) - sdklogging.setLevel("INFO") + sdklogging.setLevel(level) + elif only_error_logs: + level = "ERROR" logger = cdislogging.get_logger( __name__, format=gen3.LOG_FORMAT, log_level="error" ) - sdklogging.setLevel("ERROR") + sdklogging.setLevel(level) else: + level = "WARNING" logger = cdislogging.get_logger( __name__, format=gen3.LOG_FORMAT, log_level="warning" ) - sdklogging.setLevel("WARNING") + sdklogging.setLevel(level) + + # set other module loggers to the same level as the SDK + # so modules like httpx, etc use the same level + for name in logging.root.manager.loggerDict: + logger = logging.getLogger(name) + logger.setLevel(level) main.add_command(auth.auth) @@ -145,4 +159,5 @@ def main( main.add_command(nih.nih) main.add_command(users.users) main.add_command(wrap.run) +main.add_command(ai.ai) main() diff --git a/gen3/cli/ai/embeddings.py b/gen3/cli/ai/embeddings.py new file mode 100644 index 000000000..e6a1ac6f7 --- /dev/null +++ b/gen3/cli/ai/embeddings.py @@ -0,0 +1,475 @@ +import asyncio +import csv +import json +import os +import sys +import traceback + +import click + +from gen3 import logging +from gen3.ai import EmbeddingsClient, LocalEmbeddingClient +from gen3.cli.ai.utils import chunk_text, get_all_nested_files + +COLLECTION_NAME_TO_ID_CACHE = {} + + +@click.command( + "publish", + help=( + """ + + Publish a manifest of already-embedded objects to a Gen3 collection. + The manifest must be a CSV/TSV with the following columns: + + \b + embedding: JSON-encoded list of floats + collection_id / collection_name: Target collection (use name to lookup id) + **metadata columns: any additional columns are treated as metadata for the embedding + + Example usage: + + \b + gen3 ai embeddings publish --collection "ctds-github-md" --manifest_file embeddings.tsv + """ + ), +) +@click.argument( + "manifest_file", + type=click.Path(exists=True, dir_okay=False), + required=True, +) +@click.option( + "--batch-size", + "batch_size", + help="max number of embeddings to collect before pushing to API in bulk per collection", + default=1000, +) +@click.option( + "--default-collection", + "default_collection", + help="Name of the default embeddings collection (used when rows don't specify).", +) +@click.pass_context +def publish_embeddings( + ctx, + manifest_file: str, + batch_size: int, + default_collection: str | None = None, +): + """ + Publish embeddings from a manifest file to a collection. + + Args: + batch_size (int): max number of embeddings before pushing to API in bulk per collection. + NOTE: as this increases it requires a larger memory footprint locally. The backend API + also has limits. + """ + auth = ctx.obj["auth_factory"].get() + client: EmbeddingsClient = ctx.obj["client"] + + manifest_file_name = click.format_filename(manifest_file) + delimiter = "\t" if manifest_file_name.endswith(".tsv") else "," + with open(manifest_file_name, encoding="utf-8") as f: + reader = csv.DictReader(f, delimiter=delimiter) + # TODO: chunk the rows in addition to the chunked API. As this stands, + # all rows are loaded into memory and only the API calls are batched + rows = list(reader) + + if not rows: + click.echo("No rows found in manifest.", err=True) + return + + # build metadata columns list (exclude embedding and collection fields) + excluded = {"embedding", "collection_id", "collection_name", "authz"} + metadata_cols = [c for c in getattr(reader, "fieldnames", []) if c not in excluded] + + pending_per_collection = {} + pending_count = 0 + for row in rows: + collection_id = row.get("collection_id") + collection_name = row.get("collection_name", "") + authz = row.get("authz") + + if not collection_id: + collection_id, collection_name = _get_collection_id_and_name( + collection_name=collection_name, + client=client, + default_collection=default_collection, + ) + + try: + embedding = json.loads(row.get("embedding", "[]")) + except json.JSONDecodeError as exc: + click.echo( + f"Invalid embedding in row: {row}. Skipping. Error: {exc}", err=True + ) + continue + + metadata = {k: row[k] for k in metadata_cols if k in row} + embedding_content = {"embedding": embedding, "metadata": metadata} + + if authz: + embedding_content.update({"authz": authz}) + + pending_per_collection.setdefault(collection_id, []).append(embedding_content) + pending_count += 1 + + # create the embeddings + if pending_count > batch_size: + for ( + collection_id, + embeddings_with_metadata, + ) in pending_per_collection.items(): + # TODO: if this fails, retry? More informative error? depends on what we do on the backend + asyncio.run( + client.create_embeddings( + collection_name=collection_name, + collection_id=collection_id, + embeddings_with_metadata=embeddings_with_metadata, + ) + ) + pending_per_collection.clear() + pending_count = 0 + + # get the last batch + if pending_per_collection: + for collection_id, embeddings_with_metadata in pending_per_collection.items(): + # TODO: if this fails, retry? More informative error? depends on what we do on the backend + asyncio.run( + client.create_embeddings( + # ignore unbound type error here because we know it will be bound + collection_name=collection_name, # type: ignore + collection_id=collection_id, + embeddings_with_metadata=embeddings_with_metadata, + ) + ) + pending_per_collection.clear() + pending_count = 0 + + click.echo(f"Published {len(rows)} embeddings.") + + +def _get_collection_id_and_name( + collection_name: str, + client: EmbeddingsClient, + default_collection: str | None = None, +) -> tuple[str, str]: + """ + Gets collection id by hitting service with name and extracting ID, stores + in in-mem cache. + """ + global COLLECTION_NAME_TO_ID_CACHE + + if collection_name and collection_name in COLLECTION_NAME_TO_ID_CACHE: + # cache hit + collection_id = COLLECTION_NAME_TO_ID_CACHE[collection_name] + elif collection_name: + # cache miss + # resolve collection id if a name was supplied + collection = asyncio.run( + client.list_collections(collection_name=collection_name) + ) + collection_id = collection[0]["id"] + + # update in-mem cache + COLLECTION_NAME_TO_ID_CACHE[collection_name] = collection_id + + elif default_collection: + # resolve collection id using default_collection if provided + collection_name = default_collection + collection = asyncio.run( + client.list_collections(collection_name=collection_name) + ) + collection_id = collection[0]["id"] + + # update in-mem cache + COLLECTION_NAME_TO_ID_CACHE[collection_name] = collection_id + else: + click.echo( + f"Failed to resolve a collection. Given collection_name:'{collection_name}' / default_collection:'{default_collection}'" + ) + sys.exit(1) + + return collection_id, collection_name + + +@click.command( + "read", + help="[Not Implemented Yet] Reads embeddings data from Gen3 instance into local files.", +) +@click.option( + "--output-file", + "output_file", + default="embeddings.csv", + help="filename for output", + type=click.Path(writable=True), + show_default=True, +) +@click.pass_context +def read_embeddings(ctx, output_file): + """ + Reads embeddings data from Gen3 instance into local files. + """ + auth = ctx.obj["auth_factory"].get() + raise NotImplementedError("`gen3 ai embeddings read` is not implemented yet.") + + +@click.command( + "delete", + help="[Not Implemented Yet] Deletes specified embeddings data in local files from Gen3 instance.", +) +@click.pass_context +def delete_embeddings(ctx): + """ + Deletes specified embeddings data in local files from Gen3 instance. + """ + raise NotImplementedError("`gen3 ai embeddings delete` is not implemented yet.") + + +@click.command() +# TODO: Eventually, this could first check the Gen3 AI Model Repo / Inference API(s) to see if this +# model is available and require some explicit --local flag to allow sentence-transformers? +@click.option( + "--model", + "-m", + default="all-MiniLM-L6-v2", + help="Sentence-transformers model name (default: all-MiniLM-L6-v2)", +) +@click.option( + "--out-manifest-file", + "-o", + default="output.tsv", + help="Output filename for final manifest (default: output.tsv)", +) +@click.option( + "--collection-name", + type=str, + required=False, + help="collection_name for all processed files (ends up in output)", +) +@click.option( + "--collection-id", + type=str, + required=False, + help="collection_id for all processed files (ends up in output)", +) +@click.option( + "--chunk-size", + default=512, + type=int, + help="Number of characters per chunk (default: 512)", +) +@click.option( + "--chunk-overlap", + default=50, + type=int, + help="Number of characters to overlap between chunks (default: 50)", +) +@click.option( + "--strategy", + "-s", + default="text", + type=str, + help="Embedding strategy: text / file. File attempts to embed the entire file instead of chunking the text within (default: text)", +) +@click.option( + "--recursive", + "-r", + is_flag=True, + help="Recursively process directories", +) +@click.option( + "--file-extensions", + "-f", + multiple=True, + help="File extensions to process. Can be supplied multiple times. ex: -f .txt -f .md -f .sql", + default=[".txt", ".md", ".tsv", ".csv"], +) +@click.option( + "--keep-text", + is_flag=True, + help="Whether or not to include the original text (non-embedded) in the final output.", +) +@click.option( + "--keep-folder-paths", + is_flag=True, + help="Whether or not to include the original folder paths in the final output metadata.", +) +@click.argument("paths", nargs=-1, type=click.Path(exists=True)) +@click.pass_context +def chunk_and_embed_text( + ctx: click.Context, + out_manifest_file: str, + model: str, + collection_name: str, + collection_id: str, + chunk_size: int, + chunk_overlap: int, + strategy: str, + recursive: bool, + file_extensions: list, + keep_text: bool, + keep_folder_paths: bool, + paths: list[str], +) -> None: + """ + Chunk files and create embeddings locally, then submit to the service. + + PATHS: One or more files or directories to chunk and embed + + Embed files in a directory and output a manifest to publish + collection is used to get model / dimensions + this requires CPU/GPU for the actual embedding process and is not optimized for + production-level and extensive embedding, it's really for small-size and local testing. + + To scale this, you need to write your own pipeline to generate the manifest file format and + then use the `gen3 ai embeddings publish` command to create records in Gen3. + + chunk-size is used when strategy = text. If strategy = file, then this will attempt to pull the AI Model specified by the + collection and use it to embed the whole file. + + ex: + gen3 ai embeddings embed ./directory/ --collection "ctds-github-md" --out-manifest-file ... --strategy "text" / "file" --chunk-size 1024 + """ + paths = [click.format_filename(path) for path in paths] + all_files = get_all_nested_files( + paths=paths, file_extensions=file_extensions, recursive=recursive + ) + + click.echo(f"Found {len(all_files)} file(s) to process") + click.echo(f" Chunk size: {chunk_size} characters") + click.echo(f" Chunk overlap: {chunk_overlap} characters") + click.echo(f" Model: {model}") + click.echo(f" Collection ID: {collection_id}") + click.echo(f" Collection Name: {collection_name}") + click.echo(f" Strategy: {strategy}") + click.echo(f" Recursive: {recursive}") + click.echo(f" File Extensions: {file_extensions}") + click.echo(f" Keep Text: {keep_text}") + click.echo(f" Keep Folder Paths: {keep_folder_paths}") + click.echo(f" Output: {out_manifest_file}") + + if not all_files: + click.echo() + click.echo("No files found!", err=True) + sys.exit(1) + + local_client = LocalEmbeddingClient(model_name=model) + + # by default, remove the user directory from any file paths + # TODO: we could expose an option to the CLI to customize this + prefix_to_remove_from_filepath = os.path.expanduser("~") + "/" + + # read and chunk all files + all_texts_with_metadata = _read_and_chunk_files( + all_files=all_files, + strategy=strategy, + chunk_size=chunk_size, + chunk_overlap=chunk_overlap, + keep_folder_paths=keep_folder_paths, + prefix_to_remove_from_filepath=prefix_to_remove_from_filepath, + ) + + click.echo() + click.echo(f"Total chunks to embed: {len(all_texts_with_metadata)}") + click.echo() + + # generate embeddings locally + click.echo("Generating embeddings...") + try: + embeddings_with_metadata = local_client.embed( + all_texts_with_metadata, + keep_original_text=keep_text, + show_progress_bar=True, + ) + click.echo(f"Generated {len(embeddings_with_metadata)} embeddings") + except Exception as exc: + click.echo(f" Failed to generate embeddings: {exc}", err=True) + logging.error(traceback.format_exc()) + sys.exit(1) + + click.echo() + click.echo(f"Writing embeddings to '{out_manifest_file}'...") + click.echo() + + # write to manifest file + fieldnames = ["embedding", "collection_name", "collection_id", "authz"] + + all_metadata_keys = set() + for item in embeddings_with_metadata: + all_metadata_keys.update(item["metadata"].keys()) + + fieldnames.extend(sorted(list(all_metadata_keys))) + + with open(out_manifest_file, "w", encoding="utf-8") as f: + writer = csv.DictWriter(f, fieldnames=fieldnames, delimiter="\t") + writer.writeheader() + for item in embeddings_with_metadata: + row = { + "embedding": json.dumps(item["embedding"]), + "authz": item["authz"], + "collection_name": collection_name if collection_name else "", + "collection_id": collection_id if collection_id else "", + } + row.update(item["metadata"]) + writer.writerow(row) + + click.echo() + click.echo( + f"Successfully wrote {len(embeddings_with_metadata)} embeddings to {out_manifest_file}!" + ) + + +def _read_and_chunk_files( + all_files: list[str], + strategy: str, + chunk_size: int, + chunk_overlap: int, + keep_folder_paths: bool, + prefix_to_remove_from_filepath: str = "", +): + """ + Read and chunk all files + """ + all_texts_with_metadata = [] + for file_path in all_files: + try: + with open(file_path, "r", encoding="utf-8") as f: + if not keep_folder_paths: + file_path = os.path.basename(file_path) + file_path = file_path.removeprefix(prefix_to_remove_from_filepath) + content = f.read() + texts_with_metadata = [] + if strategy == "text": + chunks = chunk_text(content, chunk_size, chunk_overlap) + texts_with_metadata.extend( + [ + { + "text": chunk, + "metadata": { + "file": file_path, + "chunk_size": chunk_size, + "chunk_overlap": chunk_overlap, + }, + } + for chunk in chunks + ] + ) + elif strategy == "file": + texts_with_metadata.append( + { + "text": content, + "metadata": { + "file": file_path, + }, + } + ) + + all_texts_with_metadata.extend(texts_with_metadata) + click.echo(f" {file_path}: {len(texts_with_metadata)} chunk(s)") + except Exception as exc: + click.echo(f" {file_path}: {exc}", err=True) + sys.exit(1) + + return all_texts_with_metadata diff --git a/gen3/cli/ai/embeddings_collections.py b/gen3/cli/ai/embeddings_collections.py new file mode 100644 index 000000000..a111dabde --- /dev/null +++ b/gen3/cli/ai/embeddings_collections.py @@ -0,0 +1,107 @@ +import asyncio +import sys + +import click +import httpx + +from gen3.cli.ai.utils import click_echo_dict_format, click_echo_if_text + + +@click.command("create") +@click.option( + "--dimensions", + required=True, + type=int, + help="Number of dimensions for the embeddings", +) +@click.option( + "--description", + default=None, + help="Optional description for the collection", +) +@click.argument("collection_name") +@click.pass_context +def create_collection( + ctx: click.Context, dimensions: int, description: str | None, collection_name: str +) -> None: + """ + Create a new vector collection. + + COLLECTION_NAME: Name for the new collection + """ + client = ctx.obj["client"] + + click.echo( + f"Creating collection '{collection_name}' with {dimensions} dimensions..." + ) + + try: + result = asyncio.run( + client.create_collection(collection_name, dimensions, description) + ) + click.echo(f"Collection created successfully!") + click_echo_dict_format(result, format="pretty_json") + except httpx.HTTPError as exc: + click.echo(f"Failed to create collection: {exc}", err=True) + sys.exit(1) + + +@click.command("read") +@click.option( + "--format", + help="Format of collections output: `json` / `pretty_json` / `text`. Defeault is `text`", + default="text", +) +@click.argument("collection_name", required=False) +@click.pass_context +def read_collections( + ctx: click.Context, format: str, collection_name: str | None +) -> None: + """ + Read vector collections. If no collection name provided, list all. + + COLLECTION_NAME: Optional specific collection name to filter by + """ + client = ctx.obj["client"] + + if collection_name is not None: + click_echo_if_text( + f"Reading vector collection {collection_name}...", format=format + ) + try: + collections = asyncio.run( + client.list_collections(collection_name=collection_name) + ) + click_echo_if_text(f"Found {collection_name} collection", format=format) + click_echo_dict_format(input_dict=collections, format=format) + except httpx.HTTPError as exc: + click.echo(f"Failed to find collection: {exc}", err=True) + sys.exit(1) + else: + click_echo_if_text("Listing all vector collections...", format=format) + try: + collections = asyncio.run(client.list_collections()).get("collections", []) + click_echo_if_text(f"Found {len(collections)} collection(s)", format=format) + click_echo_dict_format(input_dict=collections, format=format) + except httpx.HTTPError as exc: + click.echo(f"Failed to list collections: {exc}", err=True) + sys.exit(1) + + +@click.command("delete") +@click.argument("collection_name", required=False) +@click.pass_context +def delete_collection(ctx: click.Context, collection_name: str | None) -> None: + """ + Delete a vector collection. + + COLLECTION_NAME: collection name to delete + """ + client = ctx.obj["client"] + + click_echo_if_text(f"Deleting collection '{collection_name}'...") + try: + asyncio.run(client.delete_collection(collection_name)) + except httpx.HTTPError as exc: + click.echo(f"Failed to delete collection: {exc}", err=True) + sys.exit(1) diff --git a/gen3/cli/ai/main.py b/gen3/cli/ai/main.py new file mode 100644 index 000000000..ccf3ed7c6 --- /dev/null +++ b/gen3/cli/ai/main.py @@ -0,0 +1,94 @@ +""" +CLI for Gen3 AI support. + +Examples: + +# local testing +`gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings ...` + +# local testing CRUD on collections +gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings collections create "ctds-github-md" --dimensions 384 --description "All markdown from CTDS Github" +gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings collections read +gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings collections read "ctds-github-md" +gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings collections delete "ctds-github-md" + +# publish a manifest of already-embedded objects +# manifest is a CSV/TSV with columns: +# embedding: JSON list of floats serialized as a string +# authz: authz resource path (optional, will default to collection) +# collection_id / collection_name: collection embedding should be placed in (if name is provided, use list_collection(collection_name=provided) to determine the ID) +# ** additional columns are interpretted as metadata +gen3 ai embeddings publish ./tests/embeddings_tests/expr.tsv --default-collection expr +gen3 ai embeddings publish ./tests/embeddings_tests/hist.tsv --default-collection hist +gen3 ai embeddings publish ./tests/embeddings_tests/summ.tsv --default-collection summ + +# embed and get a manifest +gen3 ai embeddings embed-files --recursive --chunk-size 1024 --chunk-overlap 256 --collection-name ctds-github-md --out-manifest-file embeddings_manifest.tsv ~/Documents/repos/gen3-discovery-ai/bin/library/library_.github_README.md ~/Documents/repos/gen3-discovery-ai/bin/library/library_arborist_README.md +gen3 ai embeddings embed-files --recursive --chunk-size 1024 --chunk-overlap 256 --collection-name ctds-github-md --out-manifest-file embeddings_manifest.tsv ~/Documents/repos/gen3-discovery-ai/bin/library/ + +# against running instance using defaults. 1st download credentials and store in "~/.gen3/credentials.json" +`gen3 ai embeddings ...` +""" + +import click + +from gen3.ai import EmbeddingsClient +from gen3.cli.ai.embeddings import ( + chunk_and_embed_text, + delete_embeddings, + publish_embeddings, + read_embeddings, +) +from gen3.cli.ai.embeddings_collections import ( + create_collection, + delete_collection, + read_collections, +) + + +@click.group() +@click.option( + "--api-prefix", + default="ai", + help="Prefix after the domain for the AI-based services (default: ai).", +) +@click.pass_context +def ai(ctx: click.Context, api_prefix: str) -> None: + """ + For working with Gen3 AI + """ + ctx.obj["ai_api_prefix"] = api_prefix + + +@ai.group() +@click.pass_context +def embeddings(ctx: click.Context) -> None: + """ + For working with embeddings + """ + api_prefix = ctx.obj["ai_api_prefix"] + auth = ctx.obj["auth_factory"].get() + endpoint = ctx.obj["endpoint"] or auth.endpoint + + ctx.obj["client"] = EmbeddingsClient( + auth=auth, endpoint=endpoint, api_prefix=api_prefix + ) + + +@embeddings.group() +@click.pass_context +def collections(ctx: click.Context) -> None: + """ + For working with embeddings collections + """ + pass + + +embeddings.add_command(publish_embeddings, name="publish") +embeddings.add_command(read_embeddings, name="read") +embeddings.add_command(delete_embeddings, name="delete") +embeddings.add_command(chunk_and_embed_text, name="embed-files") + +collections.add_command(create_collection, name="create") +collections.add_command(read_collections, name="read") +collections.add_command(delete_collection, name="delete") diff --git a/gen3/cli/ai/utils.py b/gen3/cli/ai/utils.py new file mode 100644 index 000000000..aa0478078 --- /dev/null +++ b/gen3/cli/ai/utils.py @@ -0,0 +1,122 @@ +import json +import os + +import click + + +def click_echo_if_text(message: str, format: str = "text") -> None: + """ + If format is text, then echo. For one-liner prints with context on output + + Args: + message: message to print + format: text or json, determines how it's printed. This will only print is format is text + """ + if format == "text": + click.echo(message) + + +def click_echo_dict_format(input_dict: dict, format: str = "pretty_json") -> None: + """ + Prints input dict in specified format. For one-liner prints with context on how to output + + Args: + input_dict: dict to print + format: pretty_json or json, determines how it's printed + """ + + def format_text_recursive(data, indent_level=0): + lines = [] + indent = " " * indent_level + + if isinstance(data, dict): + for key, value in data.items(): + if isinstance(value, (dict, list)): + lines.append(f"{indent}{key}:") + lines.append(format_text_recursive(value, indent_level + 1)) + else: + lines.append(f"{indent}{key}: {value}") + elif isinstance(data, list): + for item in data: + if isinstance(item, (dict, list)): + item_str = format_text_recursive(item, indent_level + 1).lstrip() + lines.append(f"{indent}- {item_str}") + else: + lines.append(f"{indent}- {item}") + + return "\n".join(lines) + + output = "" + if format == "pretty_json": + output = json.dumps(input_dict, indent=2) + elif format == "json": + output = json.dumps(input_dict) + elif format == "text": + output = format_text_recursive(input_dict) + else: + raise Exception(f"Unsupported text output format: {format}") + + click.echo(output) + + +def chunk_text(text: str, chunk_size: int, chunk_overlap: int) -> list[str]: + """ + Split text into overlapping chunks. + + Args: + text: Text to chunk + chunk_size: Maximum characters per chunk + chunk_overlap: Number of characters to overlap between chunks + + Returns: + List of text chunks + """ + chunks = [] + start = 0 + + while start < len(text): + end = start + chunk_size + chunk = text[start:end] + + if not chunk: + break + + if end < len(text): + # look for sentence boundaries + for delimiter in [".", "!", "?", "\n"]: + last_delimiter = chunk.rfind(delimiter) + # only break if delimiter is in the latter half + if last_delimiter > chunk_size * 0.5: + end = start + last_delimiter + 1 + break + + chunks.append(chunk.strip()) + start = end - chunk_overlap + + return chunks + + +def get_all_nested_files( + paths: list[str], file_extensions: list[str], recursive: bool = True +): + """ + Get all nested files with the given extensions from a list of paths. + + Args: + paths: List of paths to search + file_extensions: List of extensions to look for + recursive: Whether to search recursively + """ + all_files = [] + for path in paths: + if recursive and os.path.isdir(path): + # recursively find all text files + for root, _, files in os.walk(path): + for file in files: + if file.endswith(tuple(file_extensions)): + all_files.append(os.path.join(root, file)) + else: + if os.path.isfile(path): + all_files.append(path) + + return all_files diff --git a/gen3/cli/auth.py b/gen3/cli/auth.py index a7969f38f..fea22d904 100644 --- a/gen3/cli/auth.py +++ b/gen3/cli/auth.py @@ -72,7 +72,7 @@ def wts_list(): @click.group() def auth(): - """Commands for authentication and authorization""" + """For authentication and authorization""" pass diff --git a/gen3/cli/discovery.py b/gen3/cli/discovery.py index ea8359aaf..536bd68d6 100644 --- a/gen3/cli/discovery.py +++ b/gen3/cli/discovery.py @@ -20,7 +20,7 @@ @click.group() def discovery(): - """Commands for reading and editing discovery metadata""" + """For reading and editing discovery metadata""" pass diff --git a/gen3/cli/drs_pull.py b/gen3/cli/drs_pull.py index 80c655117..e51bab5e0 100644 --- a/gen3/cli/drs_pull.py +++ b/gen3/cli/drs_pull.py @@ -249,7 +249,7 @@ def download_objects( @click.group() def drs_pull(): - """Commands for downloading and listing DRS objects and manifests""" + """For downloading and listing DRS objects and manifests""" pass diff --git a/gen3/cli/file.py b/gen3/cli/file.py index 194b14466..1fa4b7666 100644 --- a/gen3/cli/file.py +++ b/gen3/cli/file.py @@ -12,7 +12,7 @@ @click.group() def file(): - "Commands for asynchronously downloading files from a server" + "For asynchronously downloading files from a server" pass diff --git a/gen3/cli/nih.py b/gen3/cli/nih.py index a44bde47a..fa734c1b5 100644 --- a/gen3/cli/nih.py +++ b/gen3/cli/nih.py @@ -10,13 +10,13 @@ @click.group() def nih(): - """Commands for reading from NIH APIs""" + """For reading from NIH APIs""" pass @nih.group() def dbgap_study_registration(): - """Commands for interacting with the dbgap study registration api""" + """For interacting with the dbgap study registration api""" pass diff --git a/gen3/cli/objects.py b/gen3/cli/objects.py index 80ca40d95..90eb476f0 100644 --- a/gen3/cli/objects.py +++ b/gen3/cli/objects.py @@ -22,7 +22,7 @@ @click.group() def objects(): - """Commands for reading and editing objects""" + """For reading and editing objects""" pass diff --git a/gen3/cli/pfb.py b/gen3/cli/pfb.py index 989c1db2b..a08498a5b 100644 --- a/gen3/cli/pfb.py +++ b/gen3/cli/pfb.py @@ -18,7 +18,7 @@ def main(): @click.group() def pfb(): - """Commands for working with Portable Format for Biomedical Data (PFB)""" + """For working with Portable Format for Biomedical Data (PFB)""" pass diff --git a/gen3/cli/users.py b/gen3/cli/users.py index 67ee2758d..c09d57538 100644 --- a/gen3/cli/users.py +++ b/gen3/cli/users.py @@ -19,7 +19,7 @@ def main(): @click.group() def users(): - """Commands for working with gen3users""" + """For working with gen3users""" pass diff --git a/gen3/cli/wss.py b/gen3/cli/wss.py index 8949631eb..1ceb21180 100644 --- a/gen3/cli/wss.py +++ b/gen3/cli/wss.py @@ -72,7 +72,7 @@ def copy(ctx, src, dest): @click.group() def wss(): - """[unfinished] Commands for Workspace Storage Service""" + """[unfinished] For Workspace Storage Service""" pass diff --git a/poetry.lock b/poetry.lock index 6fd949415..70ffc1c57 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.3.1 and should not be changed by hand. 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Easy to code. Based on Python type hints." +optional = true +python-versions = ">=3.10" +groups = ["main"] +markers = "python_version >= \"3.11\" and extra == \"ai\"" +files = [ + {file = "typer-0.25.0-py3-none-any.whl", hash = "sha256:ac01b48823d3db9a83c9e164338057eadbb1c9957a2a6b4eeb486669c560b5dc"}, + {file = "typer-0.25.0.tar.gz", hash = "sha256:123eaf9f19bb40fd268310e12a542c0c6b4fab9c98d9d23342a01ff95e3ce930"}, +] + +[package.dependencies] +annotated-doc = ">=0.0.2" +click = ">=8.2.1" +rich = ">=13.8.0" +shellingham = ">=1.3.0" + [[package]] name = "typing-extensions" version = "4.15.0" @@ -3302,7 +5719,7 @@ files = [ {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"}, {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"}, ] -markers = {dev = "python_version < \"3.11\""} +markers = {dev = "python_version == \"3.9\""} [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] @@ -3313,9 +5730,10 @@ test = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more_it type = ["pytest-mypy"] [extras] +ai = ["httpx", "sentence-transformers"] fhir = ["fhirclient"] [metadata] lock-version = "2.1" python-versions = ">=3.9, <4" -content-hash = "0ef223739ee0f4e9faf3bf60aa2c6ca6ea2757f7b84023e93c838109379a6915" +content-hash = "32aef7b614975991fca857f0b91f61c32b406dd18d63fac92861d70a4ee6ace8" diff --git a/pyproject.toml b/pyproject.toml index 8d82e591d..0e80ed381 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "gen3" homepage = "https://gen3.org/" -version = "4.27.8" +version = "4.28.0" description = "Gen3 CLI and Python SDK" authors = ["Center for Translational Data Science at the University of Chicago "] license = "Apache-2.0" @@ -41,10 +41,19 @@ gen3users = "*" # A list of all of the optional dependencies, some of which are included in the # below `extras`. They can be opted into by apps. +# fhir fhirclient = { version = "*", optional = true } +# ai +sentence-transformers = { version = "*", optional = true } +httpx = { version = "*", optional = true } + [tool.poetry.extras] fhir = ["fhirclient"] +ai = [ + "sentence-transformers", + "httpx", +] [tool.poetry.group.dev.dependencies] pytest = "^6.0.0" diff --git a/tests/conftest.py b/tests/conftest.py index f118fe9f5..0a262b826 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,8 +3,9 @@ """ from multiprocessing import Process import multiprocessing -from unittest.mock import patch +from unittest.mock import MagicMock, patch import os +from click.testing import CliRunner import pytest import requests @@ -236,3 +237,30 @@ def drsclient(drs_client): Mock drsclient """ return drs_client + + +@pytest.fixture +def runner(): + """Returns a click runner instance.""" + return CliRunner() + + +@pytest.fixture +def mock_ctx_obj(): + """Returns a mock context object for click commands. + + The context contains an ``auth_factory`` that returns an auth object with + an ``endpoint`` attribute, and the ``endpoint`` and ``ai_api_prefix`` + values used by the command group. + """ + mock_auth = MagicMock() + mock_auth.endpoint = "http://localhost:4142" + + mock_auth_factory = MagicMock() + mock_auth_factory.get.return_value = mock_auth + + return { + "auth_factory": mock_auth_factory, + "endpoint": "http://localhost:4142", + "ai_api_prefix": "", + } diff --git a/tests/embeddings_tests/README.md b/tests/embeddings_tests/README.md new file mode 100644 index 000000000..26d3089d4 --- /dev/null +++ b/tests/embeddings_tests/README.md @@ -0,0 +1,5 @@ +The .tsv's in here contain snippets of previously generated embeddings of fully public data. The .tsvs have columns with the format expected for Gen3 AI Embeddings bulk import. For example, for using with `gen3 ai embeddings publish...` CLI commands. + +The embeddings represent "real" data to be used in testing in the future. + +Note: These were generated by transforming internal .h5 format files used in previous proof of concepts. \ No newline at end of file diff --git a/tests/embeddings_tests/test_expr.tsv b/tests/embeddings_tests/test_expr.tsv new file mode 100644 index 000000000..a700b4dab --- /dev/null +++ b/tests/embeddings_tests/test_expr.tsv @@ -0,0 +1,4 @@ +embedding authz collection_name collection_id case_id file_id model +[-0.2024536281824112, 0.8700736165046692, 0.6367368102073669, 1.0295965671539307, 1.3029881715774536, 0.6979042291641235, 0.09141989797353745, -0.7052130103111267, 0.05628640949726105, -0.6558999419212341, -0.698043704032898, -8.845816612243652, -0.10774289071559906, -0.8967481255531311, 0.30785858631134033, -0.218824565410614, -0.1945626139640808, -0.6851598024368286, -0.2565596103668213, -0.1704675555229187, 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+Note: These are pretty minimal, they basically just make sure the + Embeddings client gets passed the right info from the command line. +""" + +from unittest.mock import AsyncMock, patch + +from gen3.cli.ai.main import ai + + +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_create_collection_success(patched_embeddings_client, runner, mock_ctx_obj): + """Test successful creation of an embeddings collection.""" + mocked_client = AsyncMock() + mocked_client.create_collection.return_value = { + "name": "ctds-github-md", + "dimensions": 384, + } + patched_embeddings_client.return_value = mocked_client + + result = runner.invoke( + ai, + [ + "embeddings", + "collections", + "create", + "ctds-github-md", + "--dimensions", + "384", + "--description", + "All markdown from CTDS Github", + ], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + mocked_client.create_collection.assert_called_once_with( + "ctds-github-md", 384, "All markdown from CTDS Github" + ) + + +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_read_collections_all_success(patched_embeddings_client, runner, mock_ctx_obj): + """Test reading all collections.""" + mocked_client = AsyncMock() + mocked_client.list_collections.return_value = { + "collections": [ + {"name": "ctds-github-md", "dimensions": 384}, + {"name": "other", "dimensions": 256}, + ] + } + patched_embeddings_client.return_value = mocked_client + + result = runner.invoke(ai, ["embeddings", "collections", "read"], obj=mock_ctx_obj) + assert result.exit_code == 0 + mocked_client.list_collections.assert_called_once_with() + assert "ctds-github-md" in result.output + assert "other" in result.output + assert "384" in result.output + assert "256" in result.output + + +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_read_collection_specific_success( + patched_embeddings_client, runner, mock_ctx_obj +): + """Test reading a specific collection.""" + mocked_client = AsyncMock() + mocked_client.list_collections.return_value = { + "name": "ctds-github-md", + "dimensions": 384, + } + patched_embeddings_client.return_value = mocked_client + + result = runner.invoke( + ai, + ["embeddings", "collections", "read", "ctds-github-md"], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + mocked_client.list_collections.assert_called_once_with( + collection_name="ctds-github-md" + ) + assert "ctds-github-md" in result.output + assert "384" in result.output + + +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_delete_collection_success(patched_embeddings_client, runner, mock_ctx_obj): + """Test successful deletion of a collection.""" + mocked_client = AsyncMock() + patched_embeddings_client.return_value = mocked_client + + result = runner.invoke( + ai, + ["embeddings", "collections", "delete", "ctds-github-md"], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + mocked_client.delete_collection.assert_called_once_with("ctds-github-md") diff --git a/tests/test_cli_ai_embeddings.py b/tests/test_cli_ai_embeddings.py new file mode 100644 index 000000000..c1c1aaa89 --- /dev/null +++ b/tests/test_cli_ai_embeddings.py @@ -0,0 +1,152 @@ +""" +Tests for the embeddings commands for: +`gen3 ai embeddings ...`. +""" + +import csv +import json +from unittest.mock import AsyncMock, MagicMock, patch + +from gen3.cli.ai.main import ai + + +@patch("gen3.cli.ai.embeddings._get_collection_id_and_name") +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_publish_embeddings_success( + patched_embeddings_client, patched_get_collection_id, runner, tmp_path, mock_ctx_obj +): + """ + Tests successful publication of embeddings from a manifest file. + + Note: tmp_path is a pytest built-in fixture + """ + mocked_embeddings_client = AsyncMock() + patched_embeddings_client.return_value = mocked_embeddings_client + patched_get_collection_id.return_value = "test_collection_id", "test_collection" + + manifest_file = tmp_path / "embeddings.tsv" + mock_json_metadata = json.dumps({"key": "value"}) + with open(manifest_file, "w") as file: + writer = csv.writer(file, delimiter="\t") + writer.writerow( + ["embedding", "collection_name", "other_data", "mock_json_metadata"] + ) + writer.writerow( + [ + json.dumps([0.1, 0.2, 0.3]), + "test_collection", + "foobar", + mock_json_metadata, + ] + ) + + result = runner.invoke( + ai, + [ + "embeddings", + "publish", + str(manifest_file), + "--default-collection", + "test_collection", + ], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + + mocked_embeddings_client.create_embeddings.assert_called() + args, kwargs = mocked_embeddings_client.create_embeddings.call_args + assert ( + kwargs["embeddings_with_metadata"][0]["metadata"].get("other_data") == "foobar" + ) + assert ( + kwargs["embeddings_with_metadata"][0]["metadata"].get("mock_json_metadata") + == mock_json_metadata + ) + assert kwargs["collection_name"] == "test_collection" + assert kwargs["collection_id"] == "test_collection_id" + + +@patch("gen3.cli.ai.embeddings._get_collection_id_and_name") +@patch("gen3.cli.ai.main.EmbeddingsClient") +def test_publish_embeddings_invalid_json( + patched_embeddings_client, patched_get_collection_id, runner, tmp_path, mock_ctx_obj +): + """ + Tests handling of invalid JSON in the embedding column of the manifest. + + Note: tmp_path is a pytest built-in fixture + """ + # patched_embeddings_client.return_value = mock_ctx_obj["client"] + patched_get_collection_id.return_value = "test_collection_id", "test_collection" + + manifest_file = tmp_path / "embeddings.tsv" + with open(manifest_file, "w") as file: + writer = csv.writer(file, delimiter="\t") + writer.writerow(["embedding", "collection_name", "guid"]) + writer.writerow(["not-a-json", "test_collection", "test_guid"]) + + result = runner.invoke( + ai, + [ + "embeddings", + "publish", + str(manifest_file), + "--default-collection", + "test_collection", + ], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + + patched_embeddings_client.create_embeddings.assert_not_called() + + +@patch("gen3.cli.ai.embeddings.LocalEmbeddingClient") +def test_chunk_and_embed_text_success( + patched_local_emb_client, runner, tmp_path, mock_ctx_obj +): + """ + Tests successful chunking and embedding of text files. + + Note: tmp_path is a pytest built-in fixture + """ + test_file = tmp_path / "test.txt" + test_file.write_text("This is a test content for embedding.") + + mock_local_client = MagicMock() + mock_local_client.embed.return_value = [ + { + "embedding": [0.1, 0.2], + "metadata": {"file": str(test_file)}, + "authz": "/foo/bar", + } + ] + patched_local_emb_client.return_value = mock_local_client + + out_manifest = tmp_path / "output.tsv" + + result = runner.invoke( + ai, + [ + "embeddings", + "embed-files", + str(test_file), + "--collection-name", + "test_collection", + "--out-manifest-file", + str(out_manifest), + "--strategy", + "text", + ], + obj=mock_ctx_obj, + ) + assert result.exit_code == 0 + + with open(out_manifest, "r") as file: + reader = csv.DictReader(file, delimiter="\t") + rows = list(reader) + assert len(rows) == 1 + assert rows[0]["collection_name"] == "test_collection" + assert rows[0]["authz"] == "/foo/bar" + assert rows[0]["file"] == str(test_file) + assert json.loads(rows[0]["embedding"]) == [0.1, 0.2] From 0cc4178307dd5e45bcabc8436814bce853d9f551 Mon Sep 17 00:00:00 2001 From: avantol Date: Tue, 19 May 2026 14:26:00 -0500 Subject: [PATCH 2/6] chore(lock): relock --- poetry.lock | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index 70ffc1c57..d8e6e8722 100644 --- a/poetry.lock +++ b/poetry.lock @@ -5736,4 +5736,4 @@ fhir = ["fhirclient"] [metadata] lock-version = "2.1" python-versions = ">=3.9, <4" -content-hash = "32aef7b614975991fca857f0b91f61c32b406dd18d63fac92861d70a4ee6ace8" +content-hash = "6bac3e45c1ab99891dfbbf2c9b0fa36654fdfbd27cfd6a3e928253b38f3cf837" diff --git a/pyproject.toml b/pyproject.toml index 0e80ed381..6bc3c0b77 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,7 +45,7 @@ gen3users = "*" fhirclient = { version = "*", optional = true } # ai -sentence-transformers = { version = "*", optional = true } +sentence-transformers = { version = ">=5.1.2", optional = true } httpx = { version = "*", optional = true } [tool.poetry.extras] From 52a59e05f118150f3a44e811a70e0016fc408f56 Mon Sep 17 00:00:00 2001 From: avantol Date: Tue, 19 May 2026 14:33:48 -0500 Subject: [PATCH 3/6] chore(python): remove unsupported 3.9 version --- .github/workflows/ci.yaml | 3 +- poetry.lock | 1095 ++----------------------------------- pyproject.toml | 6 +- 3 files changed, 51 insertions(+), 1053 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 068d548de..cf9ce9f34 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -20,8 +20,7 @@ jobs: matrix: # the versions for which we require the CI to pass on PRs can # be updated in the repo settings (branch rules) - version: ['3.9', '3.10', '3.11', '3.12', '3.13'] + version: ['3.10', '3.11', '3.12', '3.13'] fail-fast: false # run for all versions even if one of them fails with: python-version: ${{ matrix.version }} - poetry-version: '2.2.1' # Max version supported by python 3.9 diff --git a/poetry.lock b/poetry.lock index d8e6e8722..4c2d5ecfd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -210,7 +210,7 @@ description = "Document parameters, class attributes, return types, and variable optional = true python-versions = ">=3.8" groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "annotated_doc-0.0.4-py3-none-any.whl", hash = "sha256:571ac1dc6991c450b25a9c2d84a3705e2ae7a53467b5d111c24fa8baabbed320"}, {file = "annotated_doc-0.0.4.tar.gz", hash = "sha256:fbcda96e87e9c92ad167c2e53839e57503ecfda18804ea28102353485033faa4"}, @@ -244,7 +244,7 @@ description = "Timeout context manager for asyncio programs" optional = false python-versions = ">=3.8" groups = ["main"] -markers = "python_version < \"3.11\"" +markers = "python_version == \"3.10\"" files = [ {file = "async_timeout-5.0.1-py3-none-any.whl", hash = "sha256:39e3809566ff85354557ec2398b55e096c8364bacac9405a7a1fa429e77fe76c"}, {file = "async_timeout-5.0.1.tar.gz", hash = "sha256:d9321a7a3d5a6a5e187e824d2fa0793ce379a202935782d555d6e9d2735677d3"}, @@ -303,32 +303,6 @@ files = [ [package.dependencies] cryptography = "*" -[[package]] -name = "authutils" -version = "6.2.6" -description = "Gen3 auth utility functions" -optional = false -python-versions = "<4.0,>=3.9" -groups = ["dev"] -markers = "python_version < \"3.11\"" -files = [ - {file = "authutils-6.2.6-py3-none-any.whl", hash = "sha256:5c0201249aad384f706f9ac981af04eaadcea7e94df415691551e1ae00112106"}, - {file = "authutils-6.2.6.tar.gz", hash = "sha256:3043a2269d8976f73869bf7c40b125d4be8608f870ef76ea27e02727f5ba8500"}, -] - -[package.dependencies] -authlib = ">=1.1.0" -cached-property = ">=1.4,<2.0" -cdiserrors = "<2.0.0" -cryptography = ">=41.0.6" -httpx = ">=0.23.0,<1.0.0" -pyjwt = {version = ">=2.4.0,<3.0", extras = ["crypto"]} -xmltodict = ">=0.9,<1.0" - -[package.extras] -fastapi = ["fastapi (>=0.65.2,<0.66.0)"] -flask = ["Flask (<=2.3.3)"] - [[package]] name = "authutils" version = "6.2.7" @@ -336,7 +310,6 @@ description = "Gen3 auth utility functions" optional = false python-versions = "<4.0,>=3.9.2" groups = ["dev"] -markers = "python_version >= \"3.11\"" files = [ {file = "authutils-6.2.7-py3-none-any.whl", hash = "sha256:4f50990b841af56afe3a79a897df269a072035b89440dc27a80451c095cc2005"}, {file = "authutils-6.2.7.tar.gz", hash = "sha256:768ebf5f1f776e1a78ffe43f730f6fe01e1b5441e7ec9c8f99997284286dac5e"}, @@ -669,22 +642,6 @@ files = [ {file = "charset_normalizer-3.4.4.tar.gz", hash = "sha256:94537985111c35f28720e43603b8e7b43a6ecfb2ce1d3058bbe955b73404e21a"}, ] -[[package]] -name = "click" -version = "8.1.8" -description = "Composable command 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groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "fsspec-2026.3.0-py3-none-any.whl", hash = "sha256:d2ceafaad1b3457968ed14efa28798162f1638dbb5d2a6868a2db002a5ee39a4"}, {file = "fsspec-2026.3.0.tar.gz", hash = "sha256:1ee6a0e28677557f8c2f994e3eea77db6392b4de9cd1f5d7a9e87a0ae9d01b41"}, @@ -1724,7 +1454,7 @@ description = "Fast transfer of large files with the Hugging Face Hub." optional = true python-versions = ">=3.8" groups = ["main"] -markers = "extra == \"ai\" and (platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"arm64\" or platform_machine == \"aarch64\") or extra == \"ai\" and (platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"arm64\" or platform_machine == \"aarch64\" or platform_machine == \"AMD64\") and python_version >= \"3.11\"" +markers = "extra == \"ai\" and (platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"arm64\" or platform_machine == \"aarch64\")" files = [ {file = "hf_xet-1.4.3-cp313-cp313t-macosx_10_12_x86_64.whl", hash = "sha256:7551659ba4f1e1074e9623996f28c3873682530aee0a846b7f2f066239228144"}, {file = "hf_xet-1.4.3-cp313-cp313t-macosx_11_0_arm64.whl", hash = "sha256:bee693ada985e7045997f05f081d0e12c4c08bd7626dc397f8a7c487e6c04f7f"}, @@ -1822,46 +1552,6 @@ http2 = ["h2 (>=3,<5)"] socks = ["socksio (==1.*)"] zstd = ["zstandard (>=0.18.0)"] -[[package]] -name = "huggingface-hub" -version = "0.36.2" -description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" -optional = true -python-versions = ">=3.8.0" -groups = ["main"] -markers = "python_version < \"3.11\" and extra == \"ai\"" -files = [ - {file = "huggingface_hub-0.36.2-py3-none-any.whl", hash = "sha256:48f0c8eac16145dfce371e9d2d7772854a4f591bcb56c9cf548accf531d54270"}, - {file = "huggingface_hub-0.36.2.tar.gz", hash = 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"types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] -cli = ["InquirerPy (==0.3.4)"] -dev = ["InquirerPy (==0.3.4)", "Jinja2", "Pillow", "aiohttp", "authlib (>=1.3.2)", "fastapi", "fastapi", "gradio (>=4.0.0)", "httpx", "itsdangerous", "jedi", "libcst (>=1.4.0)", "mypy (==1.15.0) ; python_version >= \"3.9\"", "mypy (>=1.14.1,<1.15.0) ; python_version == \"3.8\"", "numpy", "pytest (>=8.1.1,<8.2.2)", "pytest-asyncio", "pytest-cov", "pytest-env", "pytest-mock", "pytest-rerunfailures (<16.0)", "pytest-vcr", "pytest-xdist", "ruff (>=0.9.0)", "soundfile", "ty", "types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)", "urllib3 (<2.0)"] -fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"] -hf-transfer = ["hf_transfer (>=0.1.4)"] -hf-xet = ["hf-xet (>=1.1.2,<2.0.0)"] -inference = ["aiohttp"] -mcp = ["aiohttp", "mcp (>=1.8.0)", "typer"] -oauth = ["authlib (>=1.3.2)", "fastapi", "httpx", 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python-versions = ">=3.10.0" groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "huggingface_hub-1.12.0-py3-none-any.whl", hash = "sha256:d74939969585ee35748bd66de09baf84099d461bda7287cd9043bfb99b0e424d"}, {file = "huggingface_hub-1.12.0.tar.gz", hash = "sha256:7c3fe85e24b652334e5d456d7a812cd9a071e75630fac4365d9165ab5e4a34b6"}, @@ -1935,12 +1625,11 @@ version = "8.7.0" description = "Read metadata from Python packages" optional = false python-versions = ">=3.9" -groups = ["main", "dev"] +groups = ["main"] files = [ {file = "importlib_metadata-8.7.0-py3-none-any.whl", hash = "sha256:e5dd1551894c77868a30651cef00984d50e1002d06942a7101d34870c5f02afd"}, {file = "importlib_metadata-8.7.0.tar.gz", hash = "sha256:d13b81ad223b890aa16c5471f2ac3056cf76c5f10f82d6f9292f0b415f389000"}, ] -markers = {dev = "python_version == \"3.9\""} [package.dependencies] zipp = ">=3.20" @@ -2001,19 +1690,6 @@ url = "https://github.com/uc-cdis/indexd.git" reference = "5.0.4" resolved_reference = "5d3e54c31edba946f92d6d9ddccb016a7520e668" -[[package]] -name = "iniconfig" -version = "2.1.0" -description = "brain-dead simple config-ini parsing" -optional = false -python-versions = ">=3.8" -groups = ["dev"] -markers = "python_version < \"3.11\"" -files = [ - {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"}, - {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"}, -] - [[package]] name = "iniconfig" version = "2.3.0" @@ -2021,7 +1697,6 @@ description = "brain-dead simple config-ini parsing" optional = false python-versions = ">=3.10" groups = ["dev"] -markers = "python_version >= \"3.11\"" files = [ {file = "iniconfig-2.3.0-py3-none-any.whl", hash = "sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"}, {file = "iniconfig-2.3.0.tar.gz", hash = "sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"}, @@ -2120,7 +1795,7 @@ description = "Python port of markdown-it. Markdown parsing, done right!" optional = true python-versions = ">=3.10" groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "markdown_it_py-4.0.0-py3-none-any.whl", hash = "sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147"}, {file = "markdown_it_py-4.0.0.tar.gz", hash = "sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3"}, @@ -2280,7 +1955,7 @@ description = "Markdown URL utilities" optional = true python-versions = ">=3.7" groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"}, {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"}, @@ -2483,7 +2158,7 @@ description = "Python package for creating and manipulating graphs and networks" optional = true python-versions = ">=3.9" groups = ["main"] -markers = "python_version < \"3.11\" and extra == \"ai\"" +markers = "python_version == \"3.10\" and extra == \"ai\"" files = [ {file = "networkx-3.2.1-py3-none-any.whl", hash = "sha256:f18c69adc97877c42332c170849c96cefa91881c99a7cb3e95b7c659ebdc1ec2"}, {file = "networkx-3.2.1.tar.gz", hash = "sha256:9f1bb5cf3409bf324e0a722c20bdb4c20ee39bf1c30ce8ae499c8502b0b5e0c6"}, @@ -2551,7 +2226,7 @@ description = "Fundamental package for array computing in Python" optional = false python-versions = ">=3.9" groups = ["main"] -markers = "python_version < \"3.11\"" +markers = "python_version == \"3.10\"" files = [ {file = "numpy-2.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:51129a29dbe56f9ca83438b706e2e69a39892b5eda6cedcb6b0c9fdc9b0d3ece"}, {file = "numpy-2.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:f15975dfec0cf2239224d80e32c3170b1d168335eaedee69da84fbe9f1f9cd04"}, @@ -2692,7 +2367,7 @@ description = "CUBLAS native runtime libraries" optional = true python-versions = ">=3" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" files = [ {file = "nvidia_cublas-13.1.0.3-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:c86fc7f7ae36d7528288c5d88098edcb7b02c633d262e7ddbb86b0ad91be5df2"}, {file = "nvidia_cublas-13.1.0.3-py3-none-manylinux_2_27_x86_64.whl", hash = "sha256:ee8722c1f0145ab246bccb9e452153b5e0515fd094c3678df50b2a0888b8b171"}, @@ -2713,20 +2388,6 @@ files = [ {file = "nvidia_cublas_cu12-12.6.4.1-py3-none-win_amd64.whl", hash = "sha256:9e4fa264f4d8a4eb0cdbd34beadc029f453b3bafae02401e999cf3d5a5af75f8"}, ] -[[package]] -name = "nvidia-cublas-cu12" -version = "12.8.4.1" -description = "CUBLAS native runtime libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cublas_cu12-12.8.4.1-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:b86f6dd8935884615a0683b663891d43781b819ac4f2ba2b0c9604676af346d0"}, - {file = "nvidia_cublas_cu12-12.8.4.1-py3-none-manylinux_2_27_x86_64.whl", hash = "sha256:8ac4e771d5a348c551b2a426eda6193c19aa630236b418086020df5ba9667142"}, - {file = "nvidia_cublas_cu12-12.8.4.1-py3-none-win_amd64.whl", hash = "sha256:47e9b82132fa8d2b4944e708049229601448aaad7e6f296f630f2d1a32de35af"}, -] - [[package]] name = "nvidia-cuda-cupti" version = "13.0.85" @@ -2734,7 +2395,7 @@ description = "CUDA profiling tools runtime libs." optional = true python-versions = ">=3" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\") and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\")" files = [ {file = "nvidia_cuda_cupti-13.0.85-py3-none-manylinux_2_25_aarch64.whl", hash = "sha256:796bd679890ee55fb14a94629b698b6db54bcfd833d391d5e94017dd9d7d3151"}, {file = "nvidia_cuda_cupti-13.0.85-py3-none-manylinux_2_25_x86_64.whl", hash = "sha256:4eb01c08e859bf924d222250d2e8f8b8ff6d3db4721288cf35d14252a4d933c8"}, @@ -2757,20 +2418,6 @@ files = [ {file = "nvidia_cuda_cupti_cu12-12.6.80-py3-none-win_amd64.whl", hash = "sha256:bbe6ae76e83ce5251b56e8c8e61a964f757175682bbad058b170b136266ab00a"}, ] -[[package]] -name = "nvidia-cuda-cupti-cu12" -version = "12.8.90" -description = "CUDA profiling tools runtime libs." -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cuda_cupti_cu12-12.8.90-py3-none-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = 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nvidia-nvjitlink-cu12 = "*" -[[package]] -name = "nvidia-cufft-cu12" -version = "11.3.3.83" -description = "CUFFT native runtime libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cufft_cu12-11.3.3.83-py3-none-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:848ef7224d6305cdb2a4df928759dca7b1201874787083b6e7550dd6765ce69a"}, - {file = "nvidia_cufft_cu12-11.3.3.83-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:4d2dd21ec0b88cf61b62e6b43564355e5222e4a3fb394cac0db101f2dd0d4f74"}, - {file = "nvidia_cufft_cu12-11.3.3.83-py3-none-win_amd64.whl", hash = "sha256:7a64a98ef2a7c47f905aaf8931b69a3a43f27c55530c698bb2ed7c75c0b42cb7"}, -] - -[package.dependencies] -nvidia-nvjitlink-cu12 = "*" - [[package]] name = "nvidia-cufile" version = "1.15.1.6" @@ -2968,7 +2553,7 @@ description = "cuFile GPUDirect libraries" optional = true python-versions = ">=3" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and sys_platform == \"linux\" and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\" and sys_platform == \"linux\"" files = [ {file = "nvidia_cufile-1.15.1.6-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:08a3ecefae5a01c7f5117351c64f17c7c62efa5fffdbe24fc7d298da19cd0b44"}, {file = "nvidia_cufile-1.15.1.6-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:bdc0deedc61f548bddf7733bdc216456c2fdb101d020e1ab4b88d232d5e2f6d1"}, @@ -2987,19 +2572,6 @@ files = [ {file = "nvidia_cufile_cu12-1.11.1.6-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:8f57a0051dcf2543f6dc2b98a98cb2719c37d3cee1baba8965d57f3bbc90d4db"}, ] -[[package]] -name = "nvidia-cufile-cu12" -version = "1.13.1.3" -description = "cuFile GPUDirect libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cufile_cu12-1.13.1.3-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:1d069003be650e131b21c932ec3d8969c1715379251f8d23a1860554b1cb24fc"}, - {file = "nvidia_cufile_cu12-1.13.1.3-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:4beb6d4cce47c1a0f1013d72e02b0994730359e17801d395bdcbf20cfb3bb00a"}, -] - [[package]] name = "nvidia-curand" version = "10.4.0.35" @@ -3007,7 +2579,7 @@ description = "CURAND native runtime libraries" optional = true python-versions = ">=3" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\") and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\")" files = [ {file = "nvidia_curand-10.4.0.35-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:133df5a7509c3e292aaa2b477afd0194f06ce4ea24d714d616ff36439cee349a"}, {file = "nvidia_curand-10.4.0.35-py3-none-manylinux_2_27_x86_64.whl", hash = "sha256:1aee33a5da6e1db083fe2b90082def8915f30f3248d5896bcec36a579d941bfc"}, @@ -3030,20 +2602,6 @@ files = [ {file = "nvidia_curand_cu12-10.3.7.77-py3-none-win_amd64.whl", hash = "sha256:6d6d935ffba0f3d439b7cd968192ff068fafd9018dbf1b85b37261b13cfc9905"}, ] -[[package]] -name = "nvidia-curand-cu12" -version = "10.3.9.90" -description = "CURAND native runtime libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_curand_cu12-10.3.9.90-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:dfab99248034673b779bc6decafdc3404a8a6f502462201f2f31f11354204acd"}, - {file = "nvidia_curand_cu12-10.3.9.90-py3-none-manylinux_2_27_x86_64.whl", hash = "sha256:b32331d4f4df5d6eefa0554c565b626c7216f87a06a4f56fab27c3b68a830ec9"}, - {file = "nvidia_curand_cu12-10.3.9.90-py3-none-win_amd64.whl", hash = "sha256:f149a8ca457277da854f89cf282d6ef43176861926c7ac85b2a0fbd237c587ec"}, -] - [[package]] name = "nvidia-cusolver" version = "12.0.4.66" @@ -3051,7 +2609,7 @@ description = "CUDA solver native runtime libraries" optional = true python-versions = ">=3" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\") and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\" and (sys_platform == \"linux\" or sys_platform == \"win32\")" files = [ {file = "nvidia_cusolver-12.0.4.66-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:02c2457eaa9e39de20f880f4bd8820e6a1cfb9f9a34f820eb12a155aa5bc92d2"}, {file = 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"sha256:2b3c89c88d01ee0e477cb7f82ef60a11a4bcd57b6b87c33f789350b59759360b"}, @@ -3139,23 +2678,6 @@ files = [ [package.dependencies] nvidia-nvjitlink-cu12 = "*" -[[package]] -name = "nvidia-cusparse-cu12" -version = "12.5.8.93" -description = "CUSPARSE native runtime libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cusparse_cu12-12.5.8.93-py3-none-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:9b6c161cb130be1a07a27ea6923df8141f3c295852f4b260c65f18f3e0a091dc"}, - {file = "nvidia_cusparse_cu12-12.5.8.93-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:1ec05d76bbbd8b61b06a80e1eaf8cf4959c3d4ce8e711b65ebd0443bb0ebb13b"}, - {file = "nvidia_cusparse_cu12-12.5.8.93-py3-none-win_amd64.whl", hash = "sha256:9a33604331cb2cac199f2e7f5104dfbb8a5a898c367a53dfda9ff2acb6b6b4dd"}, -] - -[package.dependencies] -nvidia-nvjitlink-cu12 = "*" - [[package]] name = "nvidia-cusparselt-cu12" version = "0.6.3" @@ -3170,20 +2692,6 @@ files = [ {file = "nvidia_cusparselt_cu12-0.6.3-py3-none-win_amd64.whl", hash = "sha256:3b325bcbd9b754ba43df5a311488fca11a6b5dc3d11df4d190c000cf1a0765c7"}, ] -[[package]] -name = "nvidia-cusparselt-cu12" -version = "0.7.1" -description = "NVIDIA cuSPARSELt" -optional = true -python-versions = "*" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version < \"3.11\"" -files = [ - {file = "nvidia_cusparselt_cu12-0.7.1-py3-none-manylinux2014_aarch64.whl", hash = "sha256:8878dce784d0fac90131b6817b607e803c36e629ba34dc5b433471382196b6a5"}, - {file = "nvidia_cusparselt_cu12-0.7.1-py3-none-manylinux2014_x86_64.whl", hash = "sha256:f1bb701d6b930d5a7cea44c19ceb973311500847f81b634d802b7b539dc55623"}, - {file = "nvidia_cusparselt_cu12-0.7.1-py3-none-win_amd64.whl", hash = "sha256:f67fbb5831940ec829c9117b7f33807db9f9678dc2a617fbe781cac17b4e1075"}, -] - [[package]] name = "nvidia-cusparselt-cu13" version = "0.8.0" @@ -3191,7 +2699,7 @@ description = "NVIDIA cuSPARSELt" optional = true python-versions = "*" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" files = [ {file = "nvidia_cusparselt_cu13-0.8.0-py3-none-manylinux2014_aarch64.whl", hash = "sha256:400c6ed1cf6780fc6efedd64ec9f1345871767e6a1a0a552a1ea0578117ea77c"}, {file = "nvidia_cusparselt_cu13-0.8.0-py3-none-manylinux2014_x86_64.whl", hash = "sha256:25e30a8a7323935d4ad0340b95a0b69926eee755767e8e0b1cf8dd85b197d3fd"}, @@ -3211,19 +2719,6 @@ files = [ {file = "nvidia_nccl_cu12-2.26.2-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:694cf3879a206553cc9d7dbda76b13efaf610fdb70a50cba303de1b0d1530ac6"}, ] -[[package]] -name = 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"triton-3.4.0-cp313-cp313t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:7936b18a3499ed62059414d7df563e6c163c5e16c3773678a3ee3d417865035d"}, - {file = "triton-3.4.0-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:98e5c1442eaeabae2e2452ae765801bd53cd4ce873cab0d1bdd59a32ab2d9397"}, -] - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.10\""} -setuptools = ">=40.8.0" - -[package.extras] -build = ["cmake (>=3.20,<4.0)", "lit"] -tests = ["autopep8", "isort", "llnl-hatchet", "numpy", "pytest", "pytest-forked", "pytest-xdist", "scipy (>=1.7.1)"] -tutorials = ["matplotlib", "pandas", "tabulate"] - [[package]] name = "triton" version = "3.6.0" @@ -5433,7 +4433,7 @@ description = "A language and compiler for custom Deep Learning operations" optional = true python-versions = "<3.15,>=3.10" groups = ["main"] -markers = "extra == \"ai\" and platform_system == \"Linux\" and python_version == \"3.11\"" +markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" files = [ {file = "triton-3.6.0-cp310-cp310-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:6c723cfb12f6842a0ae94ac307dba7e7a44741d720a40cf0e270ed4a4e3be781"}, {file = "triton-3.6.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:a6550fae429e0667e397e5de64b332d1e5695b73650ee75a6146e2e902770bea"}, @@ -5463,7 +4463,7 @@ description = "Typer, build great CLIs. Easy to code. Based on Python type hints optional = true python-versions = ">=3.10" groups = ["main"] -markers = "python_version >= \"3.11\" and extra == \"ai\"" +markers = "extra == \"ai\"" files = [ {file = "typer-0.25.0-py3-none-any.whl", hash = "sha256:ac01b48823d3db9a83c9e164338057eadbb1c9957a2a6b4eeb486669c560b5dc"}, {file = "typer-0.25.0.tar.gz", hash = "sha256:123eaf9f19bb40fd268310e12a542c0c6b4fab9c98d9d23342a01ff95e3ce930"}, @@ -5714,12 +4714,11 @@ version = "3.23.0" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.9" -groups = ["main", "dev"] +groups = ["main"] files = [ {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"}, {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"}, ] -markers = {dev = "python_version == \"3.9\""} [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] @@ -5735,5 +4734,5 @@ fhir = ["fhirclient"] [metadata] lock-version = "2.1" -python-versions = ">=3.9, <4" -content-hash = "6bac3e45c1ab99891dfbbf2c9b0fa36654fdfbd27cfd6a3e928253b38f3cf837" +python-versions = ">=3.10, <4" +content-hash = "a8d8bb7279223233f99480ff117247ea3244ffb379aca990e6c708096733bb24" diff --git a/pyproject.toml b/pyproject.toml index 6bc3c0b77..66c07a8d4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,12 +13,12 @@ classifiers = [ "Intended Audience :: Science/Research", "Intended Audience :: Developers", "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.13", "Topic :: Scientific/Engineering", ] [tool.poetry.dependencies] -python = ">=3.9, <4" +python = ">=3.10, <4" requests = "*" indexclient = "^2.3.0" drsclient = ">=0.3.0" @@ -45,7 +45,7 @@ gen3users = "*" fhirclient = { version = "*", optional = true } # ai -sentence-transformers = { version = ">=5.1.2", optional = true } +sentence-transformers = { version = ">5.1.2", optional = true } httpx = { version = "*", optional = true } [tool.poetry.extras] From 288d05bffc981954269e9c80b67df888de6a6ea2 Mon Sep 17 00:00:00 2001 From: avantol Date: Tue, 19 May 2026 14:35:23 -0500 Subject: [PATCH 4/6] chore(lock): relock --- poetry.lock | 8 ++++---- pyproject.toml | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4c2d5ecfd..6c7b5f14e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3885,15 +3885,15 @@ test = ["Cython", "array-api-strict (>=2.3.1)", "asv", "gmpy2", "hypothesis (>=6 [[package]] name = "sentence-transformers" -version = "5.4.1" +version = "5.5.0" description = "Embeddings, Retrieval, and Reranking" optional = true python-versions = ">=3.10" groups = ["main"] markers = "extra == \"ai\"" files = [ - {file = "sentence_transformers-5.4.1-py3-none-any.whl", hash = "sha256:a6d640fc363849b63affb8e140e9d328feabab86f83d58ac3e16b1c28140b790"}, - {file = "sentence_transformers-5.4.1.tar.gz", hash = "sha256:436bcb1182a0ff42a8fb2b1c43498a70d0a75b688d182f2cd0d1dd115af61ddc"}, + {file = "sentence_transformers-5.5.0-py3-none-any.whl", hash = "sha256:75313fdcc2397ec4b58297c25d6187fcca5a6b2aeb09570a72eff5a3223d8d58"}, + {file = "sentence_transformers-5.5.0.tar.gz", hash = "sha256:9cec675e68bfe09d07466d1f13ab06d1d79d60a0f45b154baf433bde6ae159cb"}, ] [package.dependencies] @@ -4735,4 +4735,4 @@ fhir = ["fhirclient"] [metadata] lock-version = "2.1" python-versions = ">=3.10, <4" -content-hash = "a8d8bb7279223233f99480ff117247ea3244ffb379aca990e6c708096733bb24" +content-hash = "ad4564219d1989ff8c288873aea43c27bd61c9c71d6e8291d50a2306c879ca5e" diff --git a/pyproject.toml b/pyproject.toml index 66c07a8d4..c4b9644e1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,7 +45,7 @@ gen3users = "*" fhirclient = { version = "*", optional = true } # ai -sentence-transformers = { version = ">5.1.2", optional = true } +sentence-transformers = { version = ">5.4.1", optional = true } httpx = { version = "*", optional = true } [tool.poetry.extras] From b185d8b3b382aaa44dbeada9fd35f646fdde004e Mon Sep 17 00:00:00 2001 From: avantol Date: Tue, 19 May 2026 14:41:05 -0500 Subject: [PATCH 5/6] chore(deps): security-safe torch version --- poetry.lock | 425 +++++++------------------------------------------ pyproject.toml | 6 +- 2 files changed, 58 insertions(+), 373 deletions(-) diff --git a/poetry.lock b/poetry.lock index 6c7b5f14e..481d74ee8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -644,14 +644,14 @@ files = [ [[package]] name = "click" -version = "8.3.0" +version = "8.4.0" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.10" groups = ["main", "dev"] files = [ - {file = "click-8.3.0-py3-none-any.whl", hash = "sha256:9b9f285302c6e3064f4330c05f05b81945b2a39544279343e6e7c5f27a9baddc"}, - {file = "click-8.3.0.tar.gz", hash = "sha256:e7b8232224eba16f4ebe410c25ced9f7875cb5f3263ffc93cc3e8da705e229c4"}, + {file = "click-8.4.0-py3-none-any.whl", hash = "sha256:40c50b7c6c6adac2823d411041ec84f3f103f1b280d5e9ce0d7f998995832f81"}, + {file = "click-8.4.0.tar.gz", hash = "sha256:638f1338fe1235c8f4e008e4a8a254fb5c5fbdcbb40ece3c9142ebb78e792973"}, ] [package.dependencies] @@ -842,10 +842,10 @@ test-randomorder = ["pytest-randomly"] name = "cuda-bindings" version = "13.2.0" description = "Python bindings for CUDA" -optional = true +optional = false python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" +markers = "platform_system == \"Linux\"" files = [ {file = "cuda_bindings-13.2.0-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:08b395f79cb89ce0cd8effff07c4a1e20101b873c256a1aeb286e8fd7bd0f556"}, {file = "cuda_bindings-13.2.0-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:d6f3682ec3c4769326aafc67c2ba669d97d688d0b7e63e659d36d2f8b72f32d6"}, @@ -877,10 +877,10 @@ all = ["cuda-toolkit[cufile] (==13.*) ; sys_platform == \"linux\"", "cuda-toolki name = "cuda-pathfinder" version = "1.5.3" description = "Pathfinder for CUDA components" -optional = true +optional = false python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" +markers = "platform_system == \"Linux\"" files = [ {file = "cuda_pathfinder-1.5.3-py3-none-any.whl", hash = "sha256:dff021123aedbb4117cc7ec81717bbfe198fb4e8b5f1ee57e0e084fec5c8577d"}, ] @@ -889,10 +889,10 @@ files = [ name = "cuda-toolkit" version = "13.0.2" description = "CUDA Toolkit meta-package" -optional = true +optional = false python-versions = "*" groups = ["main"] -markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" +markers = "platform_system == \"Linux\"" files = [ {file = "cuda_toolkit-13.0.2-py2.py3-none-any.whl", hash = "sha256:b198824cf2f54003f50d64ada3a0f184b42ca0846c1c94192fa269ecd97a66eb"}, ] @@ -1170,10 +1170,9 @@ tests = ["pytest (>=2.5)", "pytest-cov", "responses"] name = "filelock" version = "3.29.0" description = "A platform independent file lock." -optional = true +optional = false python-versions = ">=3.10" groups = ["main"] -markers = "extra == \"ai\"" files = [ {file = "filelock-3.29.0-py3-none-any.whl", hash = "sha256:96f5f6344709aa1572bbf631c640e4ebeeb519e08da902c39a001882f30ac258"}, {file = "filelock-3.29.0.tar.gz", hash = "sha256:69974355e960702e789734cb4871f884ea6fe50bd8404051a3530bc07809cf90"}, @@ -1346,10 +1345,9 @@ files = [ name = "fsspec" version = "2026.3.0" description = "File-system specification" -optional = true +optional = false python-versions = ">=3.10" groups = ["main"] -markers = "extra == \"ai\"" files = [ {file = "fsspec-2026.3.0-py3-none-any.whl", hash = "sha256:d2ceafaad1b3457968ed14efa28798162f1638dbb5d2a6868a2db002a5ee39a4"}, {file = "fsspec-2026.3.0.tar.gz", hash = "sha256:1ee6a0e28677557f8c2f994e3eea77db6392b4de9cd1f5d7a9e87a0ae9d01b41"}, @@ -1725,7 +1723,6 @@ files = [ {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"}, {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"}, ] -markers = {main = "extra == \"ai\""} [package.dependencies] MarkupSafe = ">=2.0" @@ -1911,7 +1908,6 @@ files = [ {file = "markupsafe-3.0.3-cp39-cp39-win_arm64.whl", hash = "sha256:38664109c14ffc9e7437e86b4dceb442b0096dfe3541d7864d9cbe1da4cf36c8"}, {file = "markupsafe-3.0.3.tar.gz", hash = "sha256:722695808f4b6457b320fdc131280796bdceb04ab50fe1795cd540799ebe1698"}, ] -markers = {main = "extra == \"ai\""} [[package]] name = "marshmallow" @@ -1965,10 +1961,9 @@ files = [ name = "mpmath" version = "1.3.0" description = "Python library for arbitrary-precision floating-point arithmetic" -optional = true +optional = false python-versions = "*" groups = ["main"] -markers = "extra == \"ai\"" files = [ {file = "mpmath-1.3.0-py3-none-any.whl", hash = "sha256:a0b2b9fe80bbcd81a6647ff13108738cfb482d481d826cc0e02f5b35e5c88d2c"}, {file = "mpmath-1.3.0.tar.gz", hash = "sha256:7a28eb2a9774d00c7bc92411c19a89209d5da7c4c9a9e227be8330a23a25b91f"}, @@ -2155,10 +2150,10 @@ files = [ name = "networkx" version = "3.2.1" description = "Python package for creating and manipulating graphs and networks" -optional = true +optional = false python-versions = ">=3.9" groups = ["main"] -markers = "python_version == \"3.10\" and extra == \"ai\"" +markers = "python_version == \"3.10\"" files = [ {file = "networkx-3.2.1-py3-none-any.whl", hash = "sha256:f18c69adc97877c42332c170849c96cefa91881c99a7cb3e95b7c659ebdc1ec2"}, {file = "networkx-3.2.1.tar.gz", hash = "sha256:9f1bb5cf3409bf324e0a722c20bdb4c20ee39bf1c30ce8ae499c8502b0b5e0c6"}, @@ -2175,10 +2170,10 @@ test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"] name = "networkx" version = "3.6" description = "Python package for creating and manipulating graphs and networks" -optional = true +optional = false python-versions = ">=3.11" groups = ["main"] -markers = "python_version >= \"3.12\" and extra == \"ai\"" +markers = "python_version >= \"3.12\"" files = [ {file = "networkx-3.6-py3-none-any.whl", hash = "sha256:cdb395b105806062473d3be36458d8f1459a4e4b98e236a66c3a48996e07684f"}, {file = "networkx-3.6.tar.gz", hash = "sha256:285276002ad1f7f7da0f7b42f004bcba70d381e936559166363707fdad3d72ad"}, @@ -2199,10 +2194,10 @@ test-extras = ["pytest-mpl", "pytest-randomly"] name = "networkx" version = "3.6.1" description = "Python package for creating and manipulating graphs and networks" -optional = true +optional = false python-versions = "!=3.14.1,>=3.11" groups = ["main"] -markers = "python_version == \"3.11\" and extra == \"ai\"" +markers = "python_version == \"3.11\"" files = [ {file = "networkx-3.6.1-py3-none-any.whl", hash = "sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762"}, {file = "networkx-3.6.1.tar.gz", hash = "sha256:26b7c357accc0c8cde558ad486283728b65b6a95d85ee1cd66bafab4c8168509"}, @@ -2364,143 +2359,66 @@ files = [ name = "nvidia-cublas" version = "13.1.0.3" description = "CUBLAS native runtime libraries" -optional = true +optional = false python-versions = ">=3" groups = ["main"] -markers = "python_version < \"3.12\" and extra == \"ai\" and platform_system == \"Linux\"" +markers = "platform_system == \"Linux\"" files = [ {file = "nvidia_cublas-13.1.0.3-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:c86fc7f7ae36d7528288c5d88098edcb7b02c633d262e7ddbb86b0ad91be5df2"}, {file = "nvidia_cublas-13.1.0.3-py3-none-manylinux_2_27_x86_64.whl", hash = "sha256:ee8722c1f0145ab246bccb9e452153b5e0515fd094c3678df50b2a0888b8b171"}, {file = "nvidia_cublas-13.1.0.3-py3-none-win_amd64.whl", hash = "sha256:2a3b94a37def342471c59fad7856caee4926809a72dd5270155d6a31b5b277be"}, ] -[[package]] -name = "nvidia-cublas-cu12" -version = "12.6.4.1" -description = "CUBLAS native runtime libraries" -optional = true -python-versions = ">=3" -groups = ["main"] -markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\" and extra == \"ai\" and python_version >= \"3.12\"" -files = [ - {file = "nvidia_cublas_cu12-12.6.4.1-py3-none-manylinux2014_x86_64.manylinux_2_17_x86_64.whl", hash = "sha256:08ed2686e9875d01b58e3cb379c6896df8e76c75e0d4a7f7dace3d7b6d9ef8eb"}, - {file = "nvidia_cublas_cu12-12.6.4.1-py3-none-manylinux_2_27_aarch64.whl", hash = "sha256:235f728d6e2a409eddf1df58d5b0921cf80cfa9e72b9f2775ccb7b4a87984668"}, - {file = "nvidia_cublas_cu12-12.6.4.1-py3-none-win_amd64.whl", hash = "sha256:9e4fa264f4d8a4eb0cdbd34beadc029f453b3bafae02401e999cf3d5a5af75f8"}, -] - [[package]] name = "nvidia-cuda-cupti" version = "13.0.85" description = "CUDA profiling tools runtime libs." 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= "platform_system == \"Linux\"" files = [ {file = "triton-3.6.0-cp310-cp310-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:6c723cfb12f6842a0ae94ac307dba7e7a44741d720a40cf0e270ed4a4e3be781"}, {file = "triton-3.6.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:a6550fae429e0667e397e5de64b332d1e5695b73650ee75a6146e2e902770bea"}, @@ -4734,5 +4417,5 @@ fhir = ["fhirclient"] [metadata] lock-version = "2.1" -python-versions = ">=3.10, <4" -content-hash = "ad4564219d1989ff8c288873aea43c27bd61c9c71d6e8291d50a2306c879ca5e" +python-versions = ">=3.10, <3.15" +content-hash = "61729abce82d66b6409506cee575c97349b24901add92e426091224f7059447e" diff --git a/pyproject.toml b/pyproject.toml index c4b9644e1..ef5f2bb87 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,14 +18,14 @@ classifiers = [ ] [tool.poetry.dependencies] -python = ">=3.10, <4" +python = ">=3.10, <3.15" requests = "*" indexclient = "^2.3.0" drsclient = ">=0.3.0" aiohttp = "*" backoff = "*" cdislogging = "^1.1.0" -click = "*" +click = ">=8.3.3" importlib_metadata = ">=8,<9" jsonschema = "*" # FIXME updating to >=0.6.0 breaks a few tests @@ -47,6 +47,8 @@ fhirclient = { version = "*", optional = true } # ai sentence-transformers = { version = ">5.4.1", optional = true } httpx = { version = "*", optional = true } +# TODO: Trying removing the following sub-dep when sentence-transformers updates beyond 5.5.0 +torch = ">=2.10.0" [tool.poetry.extras] fhir = ["fhirclient"] From b108532b645f5e79f900efc94247816895981b77 Mon Sep 17 00:00:00 2001 From: avantol Date: Mon, 1 Jun 2026 16:54:21 -0500 Subject: [PATCH 6/6] feat(convert): add embeddings convert, tons of fixes for publish and other commands, docs notebook, update precommit --- .pre-commit-config.yaml | 6 +- .secrets.baseline | 72 +- docs/tutorial/gen3_embeddings.ipynb | 6130 +++++++++++++++++++++++++ gen3/ai.py | 23 +- gen3/cli/ai/embeddings.py | 389 +- gen3/cli/ai/embeddings_collections.py | 14 +- gen3/cli/ai/main.py | 5 + 7 files changed, 6531 insertions(+), 108 deletions(-) create mode 100644 docs/tutorial/gen3_embeddings.ipynb diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 352da81e4..c2bd895e5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,17 +1,17 @@ repos: - repo: git@github.com:Yelp/detect-secrets - rev: v1.4.0 + rev: v1.5.0 hooks: - id: detect-secrets args: ['--baseline', '.secrets.baseline'] exclude: '(docs\/_build|poetry.lock)' - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.4.0 + rev: v6.0.0 hooks: - id: no-commit-to-branch args: [--branch, develop, --branch, master, --pattern, release/.*] - repo: https://github.com/psf/black - rev: 23.1.0 + rev: 26.5.1 hooks: - id: black additional_dependencies: ['click==8.0.4'] diff --git a/.secrets.baseline b/.secrets.baseline index 748400d46..6b112252b 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -1,5 +1,5 @@ { - "version": "1.4.0", + "version": "1.5.0", "plugins_used": [ { "name": "ArtifactoryDetector" @@ -26,6 +26,9 @@ { "name": "GitHubTokenDetector" }, + { + "name": "GitLabTokenDetector" + }, { "name": "HexHighEntropyString", "limit": 3.0 @@ -36,6 +39,9 @@ { "name": "IbmCosHmacDetector" }, + { + "name": "IPPublicDetector" + }, { "name": "JwtTokenDetector" }, @@ -49,9 +55,15 @@ { "name": "NpmDetector" }, + { + "name": "OpenAIDetector" + }, { "name": "PrivateKeyDetector" }, + { + "name": "PypiTokenDetector" + }, { "name": "SendGridDetector" }, @@ -67,6 +79,9 @@ { "name": "StripeDetector" }, + { + "name": "TelegramBotTokenDetector" + }, { "name": "TwilioKeyDetector" } @@ -75,10 +90,6 @@ { "path": "detect_secrets.filters.allowlist.is_line_allowlisted" }, - { - "path": "detect_secrets.filters.common.is_baseline_file", - "filename": ".secrets.baseline" - }, { "path": "detect_secrets.filters.common.is_ignored_due_to_verification_policies", "min_level": 2 @@ -112,33 +123,33 @@ } ], "results": { - ".travis.yml": [ + "docs/_build/html/.buildinfo": [ { - "type": "Base64 High Entropy String", - "filename": ".travis.yml", - "hashed_secret": "2b450d45e8b520a9b25727d563d1d7e036497655", + "type": "Hex High Entropy String", + "filename": "docs/_build/html/.buildinfo", + "hashed_secret": "261dc6f20f0787be0129e7c1442d3393175e68aa", "is_verified": false, - "line_number": 47 + "line_number": 3 }, { - "type": "Base64 High Entropy String", - "filename": ".travis.yml", - "hashed_secret": "8dbd93a5374b178c4c142aa603c6daf3edd8413e", + "type": "Hex High Entropy String", + "filename": "docs/_build/html/.buildinfo", + "hashed_secret": "63256a38625700f409b7ec5db8fa05ffd2cb88b2", "is_verified": false, - "line_number": 48 + "line_number": 4 } ], - "docs/_build/html/.buildinfo": [ + "docs/_build/html/.buildinfo.bak": [ { "type": "Hex High Entropy String", - "filename": "docs/_build/html/.buildinfo", - "hashed_secret": "52acb5a7ffb1bfafa0e4f02cfbbfc70c59e7906d", + "filename": "docs/_build/html/.buildinfo.bak", + "hashed_secret": "af3608e21ad7b453bd6a54b55735a397ed6cb820", "is_verified": false, "line_number": 3 }, { "type": "Hex High Entropy String", - "filename": "docs/_build/html/.buildinfo", + "filename": "docs/_build/html/.buildinfo.bak", "hashed_secret": "63256a38625700f409b7ec5db8fa05ffd2cb88b2", "is_verified": false, "line_number": 4 @@ -183,6 +194,29 @@ "line_number": 63 } ], + "docs/tutorial/gen3_embeddings.ipynb": [ + { + "type": "Hex High Entropy String", + "filename": "docs/tutorial/gen3_embeddings.ipynb", + "hashed_secret": "988d13de7f9d6ee628522ce562c368cb88f6ba35", + "is_verified": false, + "line_number": 1608 + }, + { + "type": "Hex High Entropy String", + "filename": "docs/tutorial/gen3_embeddings.ipynb", + "hashed_secret": "61d0e8952fb717a9c578dcf52e1372c1cf578d43", + "is_verified": false, + "line_number": 1617 + }, + { + "type": "Hex High Entropy String", + "filename": "docs/tutorial/gen3_embeddings.ipynb", + "hashed_secret": "a7e25a78c1711c9d27a9debedab7d39acd50ca66", + "is_verified": false, + "line_number": 1626 + } + ], "docs/tutorial/quickStart.md": [ { "type": "Hex High Entropy String", @@ -656,5 +690,5 @@ } ] }, - "generated_at": "2025-11-07T21:07:45Z" + "generated_at": "2026-06-01T21:52:01Z" } diff --git a/docs/tutorial/gen3_embeddings.ipynb b/docs/tutorial/gen3_embeddings.ipynb new file mode 100644 index 000000000..858c34fd7 --- /dev/null +++ b/docs/tutorial/gen3_embeddings.ipynb @@ -0,0 +1,6130 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "5e493ec8", + "metadata": {}, + "source": [ + "# Gen3 Embeddings Demo\n", + "\n", + "> This will demonstrate how to create and retrieve embeddings in bulk from Gen3" + ] + }, + { + "cell_type": "markdown", + "id": "aae2faf5", + "metadata": {}, + "source": [ + "First, let's install the Gen3 Python Software Development Kit (SDK), which includes a command line interface (CLI)." + ] + }, + { + "cell_type": "code", + "execution_count": 41, + "id": "555e9985", + "metadata": {}, + "outputs": [ + { + 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sniffio>=1.1 in /Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages (from anyio->httpx<1.0.0,>=0.28.1->drsclient>=0.3.0->gen3) (1.3.1)\n", + "Requirement already satisfied: MarkupSafe>=2.0 in /Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages (from jinja2->torch>=2.10.0->gen3) (3.0.3)\n", + "Note: you may need to restart the kernel to use updated packages.\n" + ] + } + ], + "source": [ + "%pip install --upgrade pip\n", + "%pip install gen3 --upgrade" + ] + }, + { + "cell_type": "code", + "execution_count": 67, + "id": "fb1a4057", + "metadata": {}, + "outputs": [], + "source": [ + "# we also need pandas for some nice visualizations of output files\n", + "import pandas as pd" + ] + }, + { + "cell_type": "markdown", + "id": "5c5a8705", + "metadata": {}, + "source": [ + "If you are running the Gen3 AI support (specifically the Gen3 Embeddings API) locally, you can set some variables to point to the right credentials file and the service.\n", + "\n", + "If you are trying to interact with a production instance, just leave the default `ai`. e.g. don't uncomment - the default credentials setup should point you to the right place." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "4fe2d271", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [], + "source": [ + "ai = \"ai\"\n", + "url_prefix = \"\"\n", + "\n", + "# TODO: Comment these out\n", + "# ai = \"--auth ~/.gen3/local_helm_test_user.json --endpoint 'http://127.0.0.1:4142' ai --api-prefix ''\"\n", + "# url_prefix = \"http://127.0.0.1:4142\"" + ] + }, + { + "cell_type": "markdown", + "id": "61ea17ba", + "metadata": {}, + "source": [ + "## Gen3 AI Embeddings CLI" + ] + }, + { + "cell_type": "code", + "execution_count": 44, + "id": "3845d202", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Usage: gen3 ai embeddings [OPTIONS] COMMAND [ARGS]...\n", + "\n", + " For working with embeddings\n", + "\n", + "Options:\n", + " --help Show this message and exit.\n", + "\n", + "Commands:\n", + " collections For working with embeddings collections\n", + " convert Convert a Gen3 Embeddings Manifest into a Gen3 Indexing...\n", + " delete [Not Implemented Yet] Deletes specified embeddings data in...\n", + " embed-files Chunk files and create embeddings locally, then submit to...\n", + " publish Publish a manifest of already-embedded objects to a Gen3...\n", + " read [Not Implemented Yet] Reads embeddings data from Gen3...\n" + ] + } + ], + "source": [ + "!gen3 ai embeddings --help" + ] + }, + { + "cell_type": "code", + "execution_count": 45, + "id": "e1431b8a", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Usage: gen3 ai embeddings collections [OPTIONS] COMMAND [ARGS]...\n", + "\n", + " For working with embeddings collections\n", + "\n", + "Options:\n", + " --help Show this message and exit.\n", + "\n", + "Commands:\n", + " create Create a new embeddings collection.\n", + " delete Delete a embeddings collection.\n", + " read Read embeddings collections.\n" + ] + } + ], + "source": [ + "!gen3 ai embeddings collections --help" + ] + }, + { + "cell_type": "markdown", + "id": "0572b68f", + "metadata": {}, + "source": [ + "Get a response from the service by reading collections. \n", + "\n", + "> IMPORTANT: You need appropriate permissions to read (and for future sections: write).\n", + "> So these commands may be empty or fail unless you have those authorizations in the environment your credentials are for." + ] + }, + { + "cell_type": "code", + "execution_count": 46, + "id": "05c068f9", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Listing all embeddings collections...\n", + "Found 11 collection(s)\n", + "- id: 1\n", + " collection_name: noaccess\n", + " description: noaccess collection\n", + " dimensions: 3\n", + " vector_type: vector\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/noaccess\n", + "- id: 2\n", + " collection_name: public\n", + " description: public collection\n", + " dimensions: 3\n", + " vector_type: vector\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/public\n", + "- id: 3\n", + " collection_name: internal\n", + " description: internal collection\n", + " dimensions: 3\n", + " vector_type: vector\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/internal\n", + "- id: 4\n", + " collection_name: d3vector\n", + " description: d3 vector collection\n", + " dimensions: 3\n", + " vector_type: vector\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/d3vector\n", + "- id: 5\n", + " collection_name: d200vector\n", + " description: d200 vector collection\n", + " dimensions: 200\n", + " vector_type: vector\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/d200vector\n", + "- id: 6\n", + " collection_name: d3000halfvec\n", + " description: d5 halfvec collection\n", + " dimensions: 3000\n", + " vector_type: halfvec\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/d3000halfvec\n", + "- id: 7\n", + " collection_name: d3halfvec\n", + " description: d3 halfvec collection\n", + " dimensions: 3\n", + " vector_type: halfvec\n", + " created_at: 2026-05-27T19:53:09.635886Z\n", + " updated_at: 2026-05-27T19:53:09.635886Z\n", + " self: /vectorstore/collections/d3halfvec\n", + "- id: 136\n", + " collection_name: ctds-github-md\n", + " description: All markdown from CTDS Github\n", + " dimensions: 384\n", + " vector_type: vector\n", + " created_at: 2026-06-01T21:14:34.957075Z\n", + " updated_at: 2026-06-01T21:14:34.957075Z\n", + " self: /vectorstore/collections/ctds-github-md\n", + "- id: 137\n", + " collection_name: expr\n", + " description: test expr data\n", + " dimensions: 256\n", + " vector_type: vector\n", + " created_at: 2026-06-01T21:14:46.314358Z\n", + " updated_at: 2026-06-01T21:14:46.314358Z\n", + " self: /vectorstore/collections/expr\n", + "- id: 138\n", + " collection_name: hist\n", + " description: test hist data\n", + " dimensions: 1536\n", + " vector_type: vector\n", + " created_at: 2026-06-01T21:14:47.053810Z\n", + " updated_at: 2026-06-01T21:14:47.053810Z\n", + " self: /vectorstore/collections/hist\n", + "- id: 139\n", + " collection_name: summ\n", + " description: test summ data\n", + " dimensions: 4096\n", + " vector_type: halfvec\n", + " created_at: 2026-06-01T21:14:48.300671Z\n", + " updated_at: 2026-06-01T21:14:48.300671Z\n", + " self: /vectorstore/collections/summ\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings collections read" + ] + }, + { + "cell_type": "markdown", + "id": "3573d245", + "metadata": {}, + "source": [ + "## Creating Embeddings Collections" + ] + }, + { + "cell_type": "markdown", + "id": "c751d6ae", + "metadata": {}, + "source": [ + "This will show creation of collections and embeddings. So you need write permission or this will fail. You can run the Gen3 Embeddings API locally to test this out. See the [Gen3 AI repo README](https://github.com/uc-cdis/gen3-ai) for more information." + ] + }, + { + "cell_type": "code", + "execution_count": 47, + "id": "a8d6127b", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Deleting collection 'ctds-github-md'...\n", + "Successfully deleted collection 'ctds-github-md'!\n", + "Creating collection 'ctds-github-md' with 384 dimensions...\n", + "Collection created successfully!\n", + "{\n", + " \"id\": 140,\n", + " \"collection_name\": \"ctds-github-md\",\n", + " \"description\": \"All markdown from CTDS Github\",\n", + " \"dimensions\": 384,\n", + " \"vector_type\": \"vector\",\n", + " \"created_at\": \"2026-06-01T21:44:28.396532Z\",\n", + " \"updated_at\": \"2026-06-01T21:44:28.396532Z\",\n", + " \"self\": \"/vectorstore/collections/ctds-github-md\"\n", + "}\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings collections delete \"ctds-github-md\"\n", + "!gen3 $ai embeddings collections create \"ctds-github-md\" --dimensions 384 --description \"All markdown from CTDS Github\"" + ] + }, + { + "cell_type": "code", + "execution_count": 48, + "id": "4df4ab6e", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Reading embeddings collection ctds-github-md...\n", + "Found ctds-github-md collection\n", + "- id: 140\n", + " collection_name: ctds-github-md\n", + " description: All markdown from CTDS Github\n", + " dimensions: 384\n", + " vector_type: vector\n", + " created_at: 2026-06-01T21:44:28.396532Z\n", + " updated_at: 2026-06-01T21:44:28.396532Z\n", + " self: /vectorstore/collections/ctds-github-md\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings collections read \"ctds-github-md\" " + ] + }, + { + "cell_type": "code", + "execution_count": 49, + "id": "9926371a", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Deleting collection 'expr'...\n", + "Successfully deleted collection 'expr'!\n", + "Deleting collection 'hist'...\n", + "Successfully deleted collection 'hist'!\n", + "Deleting collection 'summ'...\n", + "Successfully deleted collection 'summ'!\n" + ] + } + ], + "source": [ + "# try to delete collections that might already exist\n", + "!gen3 $ai embeddings collections delete \"expr\"\n", + "!gen3 $ai embeddings collections delete \"hist\"\n", + "!gen3 $ai embeddings collections delete \"summ\"" + ] + }, + { + "cell_type": "markdown", + "id": "da3c444c", + "metadata": {}, + "source": [ + "Let's create some more example collections.\n", + "\n", + "> IMPORTANT: You need permission to create and manage these collections *before* running the commands. So ensure the Gen3 operator adds these resources to the `user.yaml` and provides your user permission to them. If you are running Gen3 yourself, you can see the [Gen3 AI repo README](https://github.com/uc-cdis/gen3-ai) for more information on how to set up appropriate auth." + ] + }, + { + "cell_type": "code", + "execution_count": 50, + "id": "e1485de4", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Creating collection 'expr' with 256 dimensions...\n", + "Collection created successfully!\n", + "{\n", + " \"id\": 141,\n", + " \"collection_name\": \"expr\",\n", + " \"description\": \"test expr data\",\n", + " \"dimensions\": 256,\n", + " \"vector_type\": \"vector\",\n", + " \"created_at\": \"2026-06-01T21:44:32.235173Z\",\n", + " \"updated_at\": \"2026-06-01T21:44:32.235173Z\",\n", + " \"self\": \"/vectorstore/collections/expr\"\n", + "}\n", + "Creating collection 'hist' with 1536 dimensions...\n", + "Collection created successfully!\n", + "{\n", + " \"id\": 142,\n", + " \"collection_name\": \"hist\",\n", + " \"description\": \"test hist data\",\n", + " \"dimensions\": 1536,\n", + " \"vector_type\": \"vector\",\n", + " \"created_at\": \"2026-06-01T21:44:32.940199Z\",\n", + " \"updated_at\": \"2026-06-01T21:44:32.940199Z\",\n", + " \"self\": \"/vectorstore/collections/hist\"\n", + "}\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings collections create \"expr\" --dimensions 256 --description \"test expr data\"\n", + "!gen3 $ai embeddings collections create \"hist\" --dimensions 1536 --description \"test hist data\"" + ] + }, + { + "cell_type": "markdown", + "id": "eae44758", + "metadata": {}, + "source": [ + "You can also create collections of larger dimensional size. This will use a `vector_type` of `halfvec` to fit it into the underlying database." + ] + }, + { + "cell_type": "code", + "execution_count": 51, + "id": "5ddb964f", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Creating collection 'summ' with 4096 dimensions...\n", + "Collection created successfully!\n", + "{\n", + " \"id\": 143,\n", + " \"collection_name\": \"summ\",\n", + " \"description\": \"test summ data\",\n", + " \"dimensions\": 4096,\n", + " \"vector_type\": \"halfvec\",\n", + " \"created_at\": \"2026-06-01T21:44:33.648493Z\",\n", + " \"updated_at\": \"2026-06-01T21:44:33.648493Z\",\n", + " \"self\": \"/vectorstore/collections/summ\"\n", + "}\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings collections create \"summ\" --dimensions 4096 --description \"test summ data\"" + ] + }, + { + "cell_type": "markdown", + "id": "82116377", + "metadata": {}, + "source": [ + "## Publishing Data into Embeddings Collections" + ] + }, + { + "cell_type": "markdown", + "id": "39e87df1", + "metadata": {}, + "source": [ + "Now that we have created collections for embeddings, we can publish the actual embeddings into those collections.\n", + "\n", + "To do this, you need a Gen3 Embeddings Manifests. Conveniently, there are examples in the Gen3 Python SDK/CLI repo in the tests folder you can use." + ] + }, + { + "cell_type": "code", + "execution_count": 52, + "id": "ed2895ad", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Usage: gen3 ai embeddings publish [OPTIONS] MANIFEST_FILE\n", + "\n", + " Publish a manifest of already-embedded objects to a Gen3 collection. The\n", + " manifest must be a CSV/TSV with the following columns:\n", + "\n", + " embedding: JSON-encoded list of floats\n", + " collection_id / collection_name: Target collection (use name to lookup id)\n", + " **metadata columns: any additional columns are treated as metadata for the embedding\n", + "\n", + " Example usage:\n", + "\n", + " gen3 ai embeddings publish --collection \"ctds-github-md\" --manifest_file embeddings.tsv\n", + "\n", + "Options:\n", + " --batch-size INTEGER max number of embeddings to collect before\n", + " pushing to API in bulk per collection\n", + " --default-collection TEXT Name of the default embeddings collection\n", + " (used when rows don't specify).\n", + " -o, --out-manifest-file TEXT Output filename for final manifest\n", + " --help Show this message and exit.\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings publish --help" + ] + }, + { + "cell_type": "markdown", + "id": "cbfaa6ce", + "metadata": {}, + "source": [ + "See the above help message to understand what we need to publish embeddings. \n", + "\n", + "**tl;dr** we need a manifest file with a row per embedding. That row needs to contain the vector (embedding), along with other metadata." + ] + }, + { + "cell_type": "markdown", + "id": "718c5185", + "metadata": {}, + "source": [ + "**TODO: REPLACE THESE WITH TEST FILES**" + ] + }, + { + "cell_type": "code", + "execution_count": 53, + "id": "ba0d4f21", + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.microsoft.datawrangler.viewer.v0+json": { + "columns": [ + { + "name": "index", + "rawType": "int64", + "type": "integer" + }, + { + "name": "embedding", + "rawType": "object", + "type": "string" + }, + { + "name": "authz", + "rawType": "object", + "type": "string" + }, + { + "name": "collection_name", + "rawType": "object", + "type": "string" + }, + { + "name": "collection_id", + "rawType": "float64", + "type": "float" + }, + { + "name": "case_id", + "rawType": "object", + "type": "string" + }, + { + "name": "file_id", + "rawType": "object", + "type": "string" + }, + { + "name": "model", + "rawType": "object", + "type": "string" 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embeddingauthzcollection_namecollection_idcase_idfile_idmodel
0[-0.2024536281824112, 0.8700736165046692, 0.63.../programs/dev/projects/testproject1exprNaNTCGA-05-4244e0e055b6-6800-40e7-bde5-718823408f0cexpr
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2[-0.08159218728542328, 0.9297925233840942, 0.8.../programs/dev/projects/testproject1exprNaNTCGA-05-4250f0395da6-5f12-4a35-8aa6-0b1b47a2acbaexpr
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" + ], + "text/plain": [ + " embedding \\\n", + "0 [-0.2024536281824112, 0.8700736165046692, 0.63... \n", + "1 [-0.21098750829696655, 0.8999685049057007, 0.6... \n", + "2 [-0.08159218728542328, 0.9297925233840942, 0.8... \n", + "\n", + " authz collection_name collection_id \\\n", + "0 /programs/dev/projects/testproject1 expr NaN \n", + "1 /programs/dev/projects/testproject1 expr NaN \n", + "2 /programs/dev/projects/testproject1 expr NaN \n", + "\n", + " case_id file_id model \n", + "0 TCGA-05-4244 e0e055b6-6800-40e7-bde5-718823408f0c expr \n", + "1 TCGA-05-4249 258b0b5e-2b09-4378-9606-83955ca19d7c expr \n", + "2 TCGA-05-4250 f0395da6-5f12-4a35-8aa6-0b1b47a2acba expr " + ] + }, + "execution_count": 53, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# here's a quick visualization of the columns/data of this input manifest\n", + "df = pd.read_csv('../../tests/embeddings_tests/expr.tsv', sep='\\t', nrows=3)\n", + "df" + ] + }, + { + "cell_type": "code", + "execution_count": 54, + "id": "78ecef08", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Publishing Gen3 Embeddings Manifest: 100%|â–ˆ| 8203/8203 [00:04<00:00, 1664.85it/s\n", + "Published 8203 embeddings.\n", + "Wrote output manifest: ../../tests/embeddings_tests/expr_output.tsv.\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings publish ../../tests/embeddings_tests/expr.tsv --default-collection expr" + ] + }, + { + "cell_type": "code", + "execution_count": 55, + "id": "1464edfb", + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.microsoft.datawrangler.viewer.v0+json": { + "columns": [ + { + "name": "index", + "rawType": "int64", + "type": "integer" + }, + { + "name": "embedding", + "rawType": "object", + "type": "string" + }, + { + "name": "authz", + "rawType": "object", + "type": "string" + }, + { + "name": "collection_name", + "rawType": "object", + "type": 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embeddingauthzcollection_namecollection_idcase_idfile_idmodel
0[-0.13619163632392883, -0.21455396711826324, 0.../programs/dev/projects/testproject1histNaNTCGA-05-4244TCGA-05-4244-01Z-00-DX1.d4ff32cd-38cf-40ea-821...hist
1[-0.2422751635313034, -0.19156047701835632, 0..../programs/dev/projects/testproject1histNaNTCGA-05-4249TCGA-05-4249-01Z-00-DX1.9fce0297-cc19-4c04-872...hist
2[-0.15457499027252197, 0.021765941753983498, 0.../programs/dev/projects/testproject1histNaNTCGA-05-4250TCGA-05-4250-01Z-00-DX1.90f67fdf-dff9-46ca-af7...hist
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" + ], + "text/plain": [ + " embedding \\\n", + "0 [-0.13619163632392883, -0.21455396711826324, 0... \n", + "1 [-0.2422751635313034, -0.19156047701835632, 0.... \n", + "2 [-0.15457499027252197, 0.021765941753983498, 0... \n", + "\n", + " authz collection_name collection_id \\\n", + "0 /programs/dev/projects/testproject1 hist NaN \n", + "1 /programs/dev/projects/testproject1 hist NaN \n", + "2 /programs/dev/projects/testproject1 hist NaN \n", + "\n", + " case_id file_id model \n", + "0 TCGA-05-4244 TCGA-05-4244-01Z-00-DX1.d4ff32cd-38cf-40ea-821... hist \n", + "1 TCGA-05-4249 TCGA-05-4249-01Z-00-DX1.9fce0297-cc19-4c04-872... hist \n", + "2 TCGA-05-4250 TCGA-05-4250-01Z-00-DX1.90f67fdf-dff9-46ca-af7... hist " + ] + }, + "execution_count": 55, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# here's a quick visualization of the columns/data of this input manifest\n", + "df = pd.read_csv('../../tests/embeddings_tests/hist.tsv', sep='\\t', nrows=3)\n", + "df" + ] + }, + { + "cell_type": "code", + "execution_count": 56, + "id": "2b60bb4b", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Publishing Gen3 Embeddings Manifest: 100%|â–ˆ| 9751/9751 [00:30<00:00, 320.94it/s]\n", + "Published 9751 embeddings.\n", + "Wrote output manifest: ../../tests/embeddings_tests/hist_output.tsv.\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings publish ../../tests/embeddings_tests/hist.tsv --default-collection hist" + ] + }, + { + "cell_type": "code", + "execution_count": 57, + "id": "15ee7969", + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.microsoft.datawrangler.viewer.v0+json": { + "columns": [ + { + "name": "index", + "rawType": "int64", + "type": "integer" + }, + { + "name": "embedding", + "rawType": "object", + "type": "string" + }, + { + "name": "authz", + "rawType": "object", + "type": "string" + }, + { + "name": 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embeddingauthzcollection_namecollection_idcase_idfile_idmodel
0[0.0166015625, -0.0108642578125, 0.00028991699.../programs/dev/projects/testproject1summNaNTCGA-02-2466TCGA-02-2466.e9e97b51-1474-463b-8693-7b66f74319c9summ
1[0.00726318359375, -0.007080078125, -0.0030670.../programs/dev/projects/testproject1summNaNTCGA-02-2470TCGA-02-2470.e21f66d9-e124-43d7-81fe-489d15d69cbfsumm
2[0.022216796875, -0.0111083984375, -0.01599121.../programs/dev/projects/testproject1summNaNTCGA-02-2483TCGA-02-2483.e73f6ba1-564c-4fea-b088-f2357ff49ee7summ
\n", + "
" + ], + "text/plain": [ + " embedding \\\n", + "0 [0.0166015625, -0.0108642578125, 0.00028991699... \n", + "1 [0.00726318359375, -0.007080078125, -0.0030670... \n", + "2 [0.022216796875, -0.0111083984375, -0.01599121... \n", + "\n", + " authz collection_name collection_id \\\n", + "0 /programs/dev/projects/testproject1 summ NaN \n", + "1 /programs/dev/projects/testproject1 summ NaN \n", + "2 /programs/dev/projects/testproject1 summ NaN \n", + "\n", + " case_id file_id model \n", + "0 TCGA-02-2466 TCGA-02-2466.e9e97b51-1474-463b-8693-7b66f74319c9 summ \n", + "1 TCGA-02-2470 TCGA-02-2470.e21f66d9-e124-43d7-81fe-489d15d69cbf summ \n", + "2 TCGA-02-2483 TCGA-02-2483.e73f6ba1-564c-4fea-b088-f2357ff49ee7 summ " + ] + }, + "execution_count": 57, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# here's a quick visualization of the columns/data of this input manifest\n", + "df = pd.read_csv('../../tests/embeddings_tests/summ.tsv', sep='\\t', nrows=3)\n", + "df" + ] + }, + { + "cell_type": "code", + "execution_count": 58, + "id": "a9c15795", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Publishing Gen3 Embeddings Manifest: 100%|â–ˆ| 9523/9523 [00:58<00:00, 162.21it/s]\n", + "Published 9523 embeddings.\n", + "Wrote output manifest: ../../tests/embeddings_tests/summ_output.tsv.\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings publish ../../tests/embeddings_tests/summ.tsv --default-collection summ" + ] + }, + { + "cell_type": "markdown", + "id": "94b36274", + "metadata": {}, + "source": [ + "## Convert Published Embeddings Manifests into Indexing Manifests" + ] + }, + { + "cell_type": "markdown", + "id": "d3d234a7", + "metadata": {}, + "source": [ + "Each of the `publish` commands above generated an output file `{input_filename}_output.tsv` (unless you overrode the output filename). \n", + "\n", + "Those outputs are manifests that now contain the final `embedding_id` and other Gen3 Embedding information that came back from creating embeddings through the Gen3 Embeddings API.\n", + "\n", + "We can **convert** those _outputted_ Published Gen3 Embeddings Manifests into Gen3 Indexing Manifests to _input_ into the Gen3 Indexing process. This will allow us to create persistent, globally unique identifiers (GUIDs) in Gen3 through the Gen3 Indexing API.\n", + "\n", + "So first, let's convert to the expected format for indexing." + ] + }, + { + "cell_type": "code", + "execution_count": 59, + "id": "e27072ed", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "data": { + "application/vnd.microsoft.datawrangler.viewer.v0+json": { + "columns": [ + { + "name": "index", + "rawType": "int64", + "type": "integer" + }, + { + "name": "embedding_id", + "rawType": "object", + "type": "string" + }, + { + "name": "embedding", + "rawType": "object", + "type": "string" + }, + { + "name": "collection_id", + "rawType": "int64", + "type": "integer" + }, + { + "name": "authz", + "rawType": "object", + "type": "string" + }, + { + "name": "self", + "rawType": "object", + "type": "string" + }, + { + "name": "case_id", + "rawType": "object", + "type": "string" + }, + { + "name": "file_id", + "rawType": 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065249fd6-95d2-4dc5-b399-24d2dcddce31[-0.17901486158370972, 0.6868948340415955, 1.3...141['/vectorstore/collections/expr']/vectorstore/collections/expr/embeddings/65249...TCGA-XR-A8TG9ea1ae11-2d1e-4d55-bbc6-c6f136041c6dexpr
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TCGA-XT-AASU \n", + "\n", + " file_id model \n", + "0 9ea1ae11-2d1e-4d55-bbc6-c6f136041c6d expr \n", + "1 f3491776-22a7-4fac-baf0-2d2995b42572 expr \n", + "2 aed00751-a16b-4452-a69b-af47d910b5b5 expr " + ] + }, + "execution_count": 59, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# here's a quick visualization of the columns/data of the output manifest from previous `publish` commands\n", + "# this is what we'll convert\n", + "df = pd.read_csv('../../tests/embeddings_tests/expr_output.tsv', sep='\\t', nrows=3)\n", + "df" + ] + }, + { + "cell_type": "code", + "execution_count": 60, + "id": "735a7ee4", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Usage: gen3 ai embeddings convert [OPTIONS] MANIFEST_FILE\n", + "\n", + " Convert a Gen3 Embeddings Manifest into a Gen3 Indexing Manifest.\n", + "\n", + " The input manifest (Gen3 Embeddings Manifest) must contain at least the columns: \n", + " \n", + " embedding: JSON-encoded list of floats\n", + " authz: single Gen3 authz resource path which will control authorization to this embedding\n", + " self: URL self-representation of the embedding in the Gen3 Embeddings API\n", + " \n", + " The output file (Gen3 Indexing Manifest) will have the columns:\n", + " \n", + " guid md5 size authz acl url\n", + " \n", + " The GUID is left blank (it will be generated by the indexing), `md5` and `size` are\n", + " derived from the JSON representation of the embedding vector, `authz` is\n", + " passed through from the input, and `url` is populated from a `self`\n", + " column.\n", + " \n", + " A new file named `_converted.tsv` is created in the same directory as\n", + " the source file.\n", + " \n", + " Example:\n", + " gen3 ai embeddings convert ./tests/embeddings_tests/test_summ.tsv\n", + "\n", + "Options:\n", + " -o, --out-manifest-file TEXT Output filename for final manifest (default:\n", + " originalfile_converted.tsv)\n", + " -u, --url-prefix TEXT Prefix for ALL `urls` in the output file. If a\n", + " url provided doesn't have the prefix, it will\n", + " be added. This can be used to ensure an\n", + " appropriate https://example.com/ai prefix if\n", + " the input manifest doesn't have that in all\n", + " the `self` fields.\n", + " --help Show this message and exit.\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings convert --help" + ] + }, + { + "cell_type": "code", + "execution_count": 61, + "id": "6cfbf5d3", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Writing converted manifest to '../../tests/embeddings_tests/expr_output_converted.tsv'\n", + "Converting rows: 100%|██████████████████████| 203/203 [00:00<00:00, 8026.88it/s]\n", + "Done! Check for errors above. Gen3 Indexing Manifest: ../../tests/embeddings_tests/expr_output_converted.tsv\n", + "Writing converted manifest to '../../tests/embeddings_tests/hist_output_converted.tsv'\n", + "Converting rows: 100%|██████████████████████| 751/751 [00:00<00:00, 1462.01it/s]\n", + "Done! Check for errors above. Gen3 Indexing Manifest: ../../tests/embeddings_tests/hist_output_converted.tsv\n", + "Writing converted manifest to '../../tests/embeddings_tests/summ_output_converted.tsv'\n", + "Converting rows: 100%|███████████████████████| 523/523 [00:00<00:00, 741.44it/s]\n", + "Done! Check for errors above. Gen3 Indexing Manifest: ../../tests/embeddings_tests/summ_output_converted.tsv\n" + ] + } + ], + "source": [ + "!gen3 $ai embeddings convert ../../tests/embeddings_tests/expr_output.tsv --url-prefix $url_prefix\n", + "!gen3 $ai embeddings convert ../../tests/embeddings_tests/hist_output.tsv --url-prefix $url_prefix\n", + "!gen3 $ai embeddings convert ../../tests/embeddings_tests/summ_output.tsv --url-prefix $url_prefix" + ] + }, + { + "cell_type": "markdown", + "id": "4cb7d7e5", + "metadata": {}, + "source": [ + "That `convert` command created new `{original_filename}_converted.tsv` files. Let's take a look at those:" + ] + }, + { + "cell_type": "code", + "execution_count": 62, + "id": "c2773cdf", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "data": { + "application/vnd.microsoft.datawrangler.viewer.v0+json": { + "columns": [ + { + "name": "index", + "rawType": "int64", + "type": "integer" + }, + { + "name": "guid", + "rawType": "float64", + "type": "float" + }, + { + "name": "md5", + "rawType": "object", + "type": "string" + }, + { + "name": "size", + "rawType": "int64", + "type": "integer" + }, + { + "name": "authz", + "rawType": "object", + "type": "string" + }, + { + "name": "acl", + "rawType": "float64", + "type": "float" + }, + { + "name": "url", + "rawType": "object", + "type": "string" + } + ], + "ref": "c7485c4c-8949-43d8-b6cf-573e775ac4c4", + "rows": [ + [ + "0", + null, + "79e380cac79ff199cd1d9cfa9c386199", + "5074", + "['/vectorstore/collections/expr']", + null, + "http://127.0.0.1:4142/vectorstore/collections/expr/embeddings/65249fd6-95d2-4dc5-b399-24d2dcddce31" + ], + [ + "1", + null, + "d592a94b9b3d2e2d519e9b171ac1763e", + "5090", + "['/vectorstore/collections/expr']", + null, + "http://127.0.0.1:4142/vectorstore/collections/expr/embeddings/1793545d-cc57-40ca-ab32-e26d6e010bb6" + ], + [ + "2", + null, + "5d5fbf88f62fc3b4baabf6fa106ae71e", + "5087", + "['/vectorstore/collections/expr']", + null, + "http://127.0.0.1:4142/vectorstore/collections/expr/embeddings/73a2b78d-4bb4-4327-bcaa-ca94f527e276" + ] + ], + "shape": { + "columns": 6, + "rows": 3 + } + }, + "text/html": [ + "
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" + ], + "text/plain": [ + " guid md5 size \\\n", + "0 NaN 79e380cac79ff199cd1d9cfa9c386199 5074 \n", + "1 NaN d592a94b9b3d2e2d519e9b171ac1763e 5090 \n", + "2 NaN 5d5fbf88f62fc3b4baabf6fa106ae71e 5087 \n", + "\n", + " authz acl \\\n", + "0 ['/vectorstore/collections/expr'] NaN \n", + "1 ['/vectorstore/collections/expr'] NaN \n", + "2 ['/vectorstore/collections/expr'] NaN \n", + "\n", + " url \n", + "0 http://127.0.0.1:4142/vectorstore/collections/... \n", + "1 http://127.0.0.1:4142/vectorstore/collections/... \n", + "2 http://127.0.0.1:4142/vectorstore/collections/... " + ] + }, + "execution_count": 62, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "df = pd.read_csv('../../tests/embeddings_tests/expr_output_converted.tsv', sep='\\t', nrows=3)\n", + "df" + ] + }, + { + "cell_type": "markdown", + "id": "3ce84a39", + "metadata": {}, + "source": [ + "The above is a Gen3 Indexing Manifest with no GUIDs - we'll let the Gen3 Indexing command and backend generate those for us.\n", + "\n", + "The `md5` checksum and `size` in bytes columns above are of the JSON-stringified version of the vector (in other words, the \"data\" is the vector itself).\n", + "\n", + "`url` is a direct link to the Gen3 Embeddings API for that particular embedding.\n", + "\n", + "Now, before we index, let's validate our Gen3 Indexing manifest is correctly formatted:" + ] + }, + { + "cell_type": "code", + "execution_count": 63, + "id": "b46061fd", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [], + "source": [ + "!gen3 objects manifest validate-manifest-format ../../tests/embeddings_tests/expr_output_converted.tsv --allowed-protocols https --allowed-protocols http\n", + "!gen3 objects manifest validate-manifest-format ../../tests/embeddings_tests/hist_output_converted.tsv --allowed-protocols https --allowed-protocols http\n", + "!gen3 objects manifest validate-manifest-format ../../tests/embeddings_tests/summ_output_converted.tsv --allowed-protocols https --allowed-protocols http" + ] + }, + { + "cell_type": "code", + "execution_count": 64, + "id": "11335175", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Usage: gen3 objects manifest publish [OPTIONS] [FILE]\n", + "\n", + " Publishes specified object manifest to Gen3 instance.\n", + "\n", + "Options:\n", + " --thread-num INTEGER number of threads for indexing [default: 8]\n", + " --append-urls If supplied, will append urls for existing\n", + " records. e.g. existing urls will still exist\n", + " and new ones will be added\n", + " \n", + " By default the newly provided urls will\n", + " REPLACE existing urls\n", + " --manifest-file-delimiter TEXT string character that delimites the file\n", + " (tab or comma). Defaults to tab.\n", + " --out-manifest-file TEXT The path to output manifest [default:\n", + " indexing-output-manifest.csv]\n", + " --force-metadata-columns-even-if-empty\n", + " force the creation of a metadata column\n", + " entry for a GUID even if the value is empty.\n", + " Enabling this will force the creation of\n", + " metadata entries for every column.\n", + " --help Show this message and exit.\n" + ] + } + ], + "source": [ + "!gen3 objects manifest publish --help" + ] + }, + { + "cell_type": "markdown", + "id": "78534c5d", + "metadata": {}, + "source": [ + "TODO: fix permissions and continue writing the notebook to\n", + "\n", + "- publish indexing manifest\n", + "- get list of GUIDs from manifest\n", + "- simulate a search resulting in GUIDs\n", + "- bulk retrieve embeddings from Fence\n" + ] + }, + { + "cell_type": "code", + "execution_count": 66, + "id": "d115d1e1", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Publishing/writing object data from ../../tests/embeddings_tests/expr_output_converted.tsv...\n", + " to: https://avantol-local.dev.planx-pla.net\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,150][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,158][ ERROR] Can not update/create an indexd record with guirequests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "d . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,158][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,158][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,159][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,160][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response= File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,166][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,166][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,194][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,202][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,202][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,203][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,207][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,213][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,213][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,214][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,227][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,237][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,237][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,256][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "[2026-06-01 16:46:39,257][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,257][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,257][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,258][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "[2026-06-01 16:46:39,273][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,273][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,276][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,292][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,292][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,301][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,301][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,303][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,305][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,322][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,322][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,332][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,338][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,338][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,348][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,351][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,352][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,358][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,367][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,369][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,372][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,377][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,381][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,402][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,406][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,408][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,419][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,421][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,430][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,438][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,440][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,443][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,447][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,449][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,452][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,455][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,474][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,475][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,484][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,486][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,486][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,488][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,490][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,502][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,508][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,509][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,517][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,519][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,524][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,527][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTrequests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "PError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,540][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,540][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,552][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,554][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,555][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,562][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,563][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,565][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,575][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,581][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,586][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,586][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "[2026-06-01 16:46:39,596][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,597][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,597][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "[2026-06-01 16:46:39,616][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,616][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,616][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,626][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,627][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,645][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,653][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "[2026-06-01 16:46:39,655][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,655][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "[2026-06-01 16:46:39,662][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,662][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,665][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,668][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,687][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,687][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,690][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,694][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,698][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,699][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,705][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,720][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,720][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,724][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,727][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,730][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,730][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,733][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,747][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,768][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,768][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,769][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,769][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,769][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,776][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,776][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,801][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,801][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,810][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:39,811][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,812][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,812][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,813][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,827][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,839][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,847][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,857][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,858][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,861][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,867][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,868][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,871][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,875][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,880][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,891][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,892][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,908][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,912][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,914][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,922][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,922][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,930][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,938][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,945][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,947][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,949][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,953][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,958][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,958][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,980][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,980][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,982][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,982][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:39,992][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,993][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:39,998][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,001][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " r File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "esp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:40,020][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,020][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,021][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,024][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,030][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,034][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,043][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "[2026-06-01 16:46:40,059][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:40,059][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,059][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,060][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,069][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,071][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,088][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,092][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,097][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:40,102][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,102][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,110][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,123][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,130][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,134][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,141][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,154][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "[2026-06-01 16:46:40,167][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,167][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,172][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,187][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,187][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,198][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,202][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,209][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,219][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + "[2026-06-01 16:46:40,229][ ERROR] Can not update/create an indexd record File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + " with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,229][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,240][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,249][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "Traceback (most recent call last):\n", + " File \"/Users/avantol/Documents/repos/gen3sdk-python/gen3/tools/indexing/index_manifest.py\", line 291, in _index_record\n", + " doc = indexclient.create(**record)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 291, in create\n", + " resp = self._post(\n", + " \"index/\",\n", + " ...<2 lines>...\n", + " auth=self.auth,\n", + " )\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 43, in timeout\n", + " return func(*args, **kwargs)\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 417, in _post\n", + " handle_error(resp)\n", + " ~~~~~~~~~~~~^^^^^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/indexclient/client.py\", line 37, in handle_error\n", + " resp.raise_for_status()\n", + " ~~~~~~~~~~~~~~~~~~~~~^^\n", + " File \"/Users/avantol/Library/Caches/pypoetry/virtualenvs/gen3-NXImaaEr-py3.13/lib/python3.13/site-packages/requests/models.py\", line 1026, in raise_for_status\n", + " raise HTTPError(http_error_msg, response=self)\n", + "requests.exceptions.HTTPError: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n", + "[2026-06-01 16:46:40,260][ ERROR] Can not update/create an indexd record with guid . Detail: 401 Client Error: Permission denied. for url: https://avantol-local.dev.planx-pla.net/index/index/\n" + ] + } + ], + "source": [ + "!gen3 objects manifest publish ../../tests/embeddings_tests/expr_output_converted.tsv --out-manifest-file ../../tests/embeddings_tests/expr_output_converted_indexed.tsv" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "72e936f1", + "metadata": { + "vscode": { + "languageId": "shellscript" + } + }, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "gen3-NXImaaEr-py3.13", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.13.9" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/gen3/ai.py b/gen3/ai.py index 2fdc76b11..f8561c1a7 100644 --- a/gen3/ai.py +++ b/gen3/ai.py @@ -68,7 +68,7 @@ async def create_collection( description: str | None = None, ) -> dict[str, Any]: """ - Create a new vector collection. + Create a new vectorstore collection. Args: collection_name (str): Name of the collection to create @@ -82,10 +82,16 @@ async def create_collection( httpx.HTTPError: If the request fails """ url = f"{self.endpoint}/vectorstore/collections" + payload = { "collection_name": collection_name, "dimensions": dimensions, } + + # TODO: remove when the service does this automatically + if dimensions > 2000: + payload["vector_type"] = "halfvec" + if description: payload["description"] = description @@ -142,7 +148,7 @@ async def list_collections( self, collection_name: str | None = None ) -> list[dict[str, Any]]: """ - List all vector collections. + List all vectorstore collections. Args: collection_name (str): optional collection_name to retrieve, if not provided will list all @@ -154,13 +160,22 @@ async def list_collections( httpx.HTTPError: If the request fails """ url = f"{self.endpoint}/vectorstore/collections" + collections = [] + if collection_name: url += f"/{collection_name}" async with httpx.AsyncClient() as client: response = await client.get(url, headers=self._get_headers()) response.raise_for_status() - return response.json() + response_json = response.json() + + if collection_name: + collections = [response_json] + else: + collections = response_json.get("collections", []) + + return collections @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) async def list_embeddings( @@ -194,7 +209,7 @@ async def list_embeddings( @backoff.on_exception(backoff.expo, Exception, **DEFAULT_BACKOFF_SETTINGS) async def delete_collection(self, collection_name: str) -> None: """ - Delete a vector collection. + Delete a vectorstore collection. Args: collection_name (str): Name of the collection to delete diff --git a/gen3/cli/ai/embeddings.py b/gen3/cli/ai/embeddings.py index e6a1ac6f7..cc70e2276 100644 --- a/gen3/cli/ai/embeddings.py +++ b/gen3/cli/ai/embeddings.py @@ -1,23 +1,158 @@ import asyncio import csv +import hashlib import json import os import sys import traceback import click +from tqdm.auto import tqdm from gen3 import logging from gen3.ai import EmbeddingsClient, LocalEmbeddingClient from gen3.cli.ai.utils import chunk_text, get_all_nested_files +from gen3.utils import get_or_create_event_loop_for_thread COLLECTION_NAME_TO_ID_CACHE = {} @click.command( - "publish", + "convert", + help=(""" + Convert a Gen3 Embeddings Manifest into a Gen3 Indexing Manifest. + + \b + The input manifest (Gen3 Embeddings Manifest) must contain at least the columns: + \b + embedding: JSON-encoded list of floats + authz: single Gen3 authz resource path which will control authorization to this embedding + self: URL self-representation of the embedding in the Gen3 Embeddings API + \b + The output file (Gen3 Indexing Manifest) will have the columns: + \b + guid md5 size authz acl url + \b + The GUID is left blank (it will be generated by the indexing), `md5` and `size` are + derived from the JSON representation of the embedding vector, `authz` is + passed through from the input, and `url` is populated from a `self` + column. + \b + A new file named `_converted.tsv` is created in the same directory as + the source file. + \b + Example: + gen3 ai embeddings convert ./tests/embeddings_tests/test_summ.tsv + """), +) +@click.argument( + "manifest_file", + type=click.Path(exists=True, dir_okay=False), + required=True, +) +@click.option( + "--out-manifest-file", + "-o", + default=None, + help="Output filename for final manifest (default: originalfile_converted.tsv)", +) +@click.option( + "--url-prefix", + "-u", + default=None, help=( - """ + "Prefix for ALL `urls` in the output file. If a url provided doesn't have the prefix, it will be added. " + "This can be used to ensure an appropriate https://example.com/ai prefix if the input manifest doesn't have that " + "in all the `self` fields." + ), +) +@click.pass_context +def convert_embeddings( + ctx, + manifest_file: str, + out_manifest_file: str | None, + url_prefix: str = "", +): + """ + Convert a Gen3 Embeddings Manifest into a Gen3 Indexing Manifest. + + See above `help` for more details. + """ + auth = ctx.obj["auth_factory"].get() + client: EmbeddingsClient = ctx.obj["client"] + + manifest_file_name = click.format_filename(manifest_file) + delimiter = "\t" if manifest_file_name.endswith(".tsv") else "," + with open(manifest_file_name, encoding="utf-8") as f: + reader = csv.DictReader(f, delimiter=delimiter) + rows = list(reader) + + if not rows: + click.echo("No rows found in manifest.", err=True) + return + + out_manifest_file = ( + out_manifest_file + if out_manifest_file + else f"{os.path.splitext(manifest_file_name)[0]}_converted.tsv" + ) + click.echo(f"Writing converted manifest to '{out_manifest_file}'") + fieldnames = ["guid", "md5", "size", "authz", "acl", "url"] + + with open(out_manifest_file, "w", encoding="utf-8", newline="") as out_f: + writer = csv.DictWriter(out_f, fieldnames=fieldnames, delimiter="\t") + writer.writeheader() + row_number = 1 + for row in tqdm(rows, desc="Converting rows"): + embedding_str = row.get("embedding", "[]") + try: + # eliminate whitespace in the JSON representation for consistent hashing + embedding_json = json.dumps( + json.loads(embedding_str), separators=(",", ":") + ) + except Exception as exc: + click.echo( + f"Invalid embedding in row: {row}. Skipping. Error: {exc}", err=True + ) + continue + + md5_hash = hashlib.md5(embedding_json.encode("utf-8")).hexdigest() + size_bytes = len(embedding_json.encode("utf-8")) + authz = row.get("authz", "") + url = row.get("self", "") + + if not url: + logging.error( + f"Row #{row_number} did not contain REQUIRED `self` column contents. Continuing anyway..." + ) + + if not authz: + logging.error( + f"Row #{row_number} did not contain REQUIRED `authz` column contents. Continuing anyway..." + ) + + if not url.startswith(url_prefix): + url = url_prefix + url + + out_row = { + "guid": "", + "md5": md5_hash, + "size": size_bytes, + "authz": authz, + "acl": "", + "url": url, + } + writer.writerow(out_row) + row_number += 1 + + click.echo( + f"Done! Check for errors above. Gen3 Indexing Manifest: {out_manifest_file}" + ) + + +@click.command( + "publish", + help=(""" Publish a manifest of already-embedded objects to a Gen3 collection. The manifest must be a CSV/TSV with the following columns: @@ -31,8 +166,7 @@ \b gen3 ai embeddings publish --collection "ctds-github-md" --manifest_file embeddings.tsv - """ - ), + """), ) @click.argument( "manifest_file", @@ -50,9 +184,16 @@ "default_collection", help="Name of the default embeddings collection (used when rows don't specify).", ) +@click.option( + "--out-manifest-file", + "-o", + default=None, + help="Output filename for final manifest", +) @click.pass_context def publish_embeddings( ctx, + out_manifest_file: str | None, manifest_file: str, batch_size: int, default_collection: str | None = None, @@ -62,7 +203,8 @@ def publish_embeddings( Args: batch_size (int): max number of embeddings before pushing to API in bulk per collection. - NOTE: as this increases it requires a larger memory footprint locally. The backend API + NOTE: as this increases it requires a larger memory footprint locally (as each batch + is stored in-memory before creating in the API and then flushing). The backend API also has limits. """ auth = ctx.obj["auth_factory"].get() @@ -70,84 +212,169 @@ def publish_embeddings( manifest_file_name = click.format_filename(manifest_file) delimiter = "\t" if manifest_file_name.endswith(".tsv") else "," - with open(manifest_file_name, encoding="utf-8") as f: - reader = csv.DictReader(f, delimiter=delimiter) - # TODO: chunk the rows in addition to the chunked API. As this stands, - # all rows are loaded into memory and only the API calls are batched - rows = list(reader) - if not rows: - click.echo("No rows found in manifest.", err=True) - return + # get a total line count without loading the whole file in memory + with open(manifest_file_name, encoding="utf-8") as file: + # - 1 for header + total_rows = sum(1 for line in file) - 1 + + with open(manifest_file_name, encoding="utf-8") as file: + reader = csv.DictReader(file, delimiter=delimiter) + out_manifest_file = ( + out_manifest_file + if out_manifest_file + else f"{os.path.splitext(manifest_file_name)[0]}_output.tsv" + ) - # build metadata columns list (exclude embedding and collection fields) - excluded = {"embedding", "collection_id", "collection_name", "authz"} - metadata_cols = [c for c in getattr(reader, "fieldnames", []) if c not in excluded] - - pending_per_collection = {} - pending_count = 0 - for row in rows: - collection_id = row.get("collection_id") - collection_name = row.get("collection_name", "") - authz = row.get("authz") - - if not collection_id: - collection_id, collection_name = _get_collection_id_and_name( - collection_name=collection_name, - client=client, - default_collection=default_collection, - ) + # build metadata columns list (exclude embedding and collection fields) + excluded = {"embedding", "collection_id", "collection_name", "authz"} + metadata_cols = [ + c for c in getattr(reader, "fieldnames", []) if c not in excluded + ] - try: - embedding = json.loads(row.get("embedding", "[]")) - except json.JSONDecodeError as exc: - click.echo( - f"Invalid embedding in row: {row}. Skipping. Error: {exc}", err=True - ) - continue - - metadata = {k: row[k] for k in metadata_cols if k in row} - embedding_content = {"embedding": embedding, "metadata": metadata} - - if authz: - embedding_content.update({"authz": authz}) - - pending_per_collection.setdefault(collection_id, []).append(embedding_content) - pending_count += 1 - - # create the embeddings - if pending_count > batch_size: - for ( - collection_id, - embeddings_with_metadata, - ) in pending_per_collection.items(): - # TODO: if this fails, retry? More informative error? depends on what we do on the backend - asyncio.run( - client.create_embeddings( + pending_per_collection = {} + pending_count = 0 + total_count = 0 + + all_metadata_keys = set() + output_header_written = False + + with tqdm( + total=total_rows, + desc="Publishing Gen3 Embeddings Manifest", + mininterval=1.0, + ) as pbar: + for row in reader: + collection_id = row.get("collection_id") + collection_name = row.get("collection_name", "") + authz = row.get("authz") + + if not collection_id: + collection_id, collection_name = _get_collection_id_and_name( collection_name=collection_name, - collection_id=collection_id, - embeddings_with_metadata=embeddings_with_metadata, + client=client, + default_collection=default_collection, ) + + try: + embedding = json.loads(row.get("embedding", "[]")) + except json.JSONDecodeError as exc: + click.echo( + f"Invalid embedding in row: {row}. Skipping. Error: {exc}", + err=True, + ) + pbar.update(1) + continue + + metadata = {k: row[k] for k in metadata_cols if k in row} + embedding_content = {"embedding": embedding, "metadata": metadata} + + # this presumes that all rows have the same metadata keys since it's based + # on the overall columns of the manifest + all_metadata_keys.update(metadata.keys()) + + if authz: + embedding_content.update({"authz": authz}) + + collection_group = pending_per_collection.setdefault( + collection_id, {"name": collection_name, "embeddings": []} ) - pending_per_collection.clear() - pending_count = 0 - - # get the last batch - if pending_per_collection: - for collection_id, embeddings_with_metadata in pending_per_collection.items(): - # TODO: if this fails, retry? More informative error? depends on what we do on the backend - asyncio.run( - client.create_embeddings( - # ignore unbound type error here because we know it will be bound - collection_name=collection_name, # type: ignore - collection_id=collection_id, - embeddings_with_metadata=embeddings_with_metadata, - ) - ) - pending_per_collection.clear() - pending_count = 0 + collection_group["embeddings"].append(embedding_content) + pending_count += 1 + + # create the embeddings + if pending_count >= batch_size: + for ( + collection_id, + collection_group, + ) in pending_per_collection.items(): + loop = get_or_create_event_loop_for_thread() + created_embeddings_response = loop.run_until_complete( + client.create_embeddings( + collection_name=collection_group["name"], + collection_id=collection_id, + embeddings_with_metadata=collection_group["embeddings"], + ) + ) + created_embeddings = created_embeddings_response.get( + "embeddings", {} + ) + + _write_created_embeddings_to_file( + created_embeddings, + out_manifest_file, + all_metadata_keys=all_metadata_keys, + output_header_written=output_header_written, + ) + + total_count += pending_count + pbar.update(pending_count) + pending_per_collection.clear() + pending_count = 0 + + # get the last batch + if pending_per_collection: + for collection_id, collection_group in pending_per_collection.items(): + loop = get_or_create_event_loop_for_thread() + created_embeddings_response = loop.run_until_complete( + client.create_embeddings( + # ignore unbound type error here because we know it will be bound + collection_name=collection_group["name"], + collection_id=collection_id, + embeddings_with_metadata=collection_group["embeddings"], + ) + ) + created_embeddings = created_embeddings_response.get( + "embeddings", {} + ) + + _write_created_embeddings_to_file( + created_embeddings, + out_manifest_file, + all_metadata_keys=all_metadata_keys, + output_header_written=output_header_written, + ) + + total_count += pending_count + pbar.update(pending_count) + pending_per_collection.clear() + pending_count = 0 + + click.echo(f"Published {total_count} embeddings.") + click.echo(f"Wrote output manifest: {out_manifest_file}.") + + +def _write_created_embeddings_to_file( + created_embeddings: dict, + out_manifest_file: str, + all_metadata_keys: set, + output_header_written: bool, +): + """ + Write the provided created_embeddings to the output file. Allows calling multiple times + """ + logging.info(f"Writing batch of created embeddings to '{out_manifest_file}'...") + # write to manifest file + fieldnames = ["embedding_id", "embedding", "collection_id", "authz", "self"] + fieldnames.extend(sorted(list(all_metadata_keys))) + + with open(out_manifest_file, "w", encoding="utf-8") as f: + writer = csv.DictWriter(f, fieldnames=fieldnames, delimiter="\t") - click.echo(f"Published {len(rows)} embeddings.") + if not output_header_written: + writer.writeheader() + output_header_written = True + + for item in created_embeddings: + row = { + "embedding_id": item["embedding_id"], + "embedding": json.dumps(item["vector"]), + "authz": item.get("info", {}).get("authz", ""), + "collection_id": item.get("info", {}).get("collection_id", ""), + "self": item.get("info", {}).get("self", ""), + } + row.update(item.get("info", {}).get("metadata", {})) + writer.writerow(row) def _get_collection_id_and_name( @@ -170,6 +397,11 @@ def _get_collection_id_and_name( collection = asyncio.run( client.list_collections(collection_name=collection_name) ) + if not collection: + click.echo( + f"Failed to resolve a collection. Given collection_name:'{collection_name}' / default_collection:'{default_collection}'" + ) + sys.exit(1) collection_id = collection[0]["id"] # update in-mem cache @@ -181,6 +413,11 @@ def _get_collection_id_and_name( collection = asyncio.run( client.list_collections(collection_name=collection_name) ) + if not collection: + click.echo( + f"Failed to resolve a collection. Given collection_name:'{collection_name}' / default_collection:'{default_collection}'" + ) + sys.exit(1) collection_id = collection[0]["id"] # update in-mem cache diff --git a/gen3/cli/ai/embeddings_collections.py b/gen3/cli/ai/embeddings_collections.py index a111dabde..2fa8fa9fa 100644 --- a/gen3/cli/ai/embeddings_collections.py +++ b/gen3/cli/ai/embeddings_collections.py @@ -25,7 +25,7 @@ def create_collection( ctx: click.Context, dimensions: int, description: str | None, collection_name: str ) -> None: """ - Create a new vector collection. + Create a new embeddings collection. COLLECTION_NAME: Name for the new collection """ @@ -58,7 +58,7 @@ def read_collections( ctx: click.Context, format: str, collection_name: str | None ) -> None: """ - Read vector collections. If no collection name provided, list all. + Read embeddings collections. If no collection name provided, list all. COLLECTION_NAME: Optional specific collection name to filter by """ @@ -66,7 +66,7 @@ def read_collections( if collection_name is not None: click_echo_if_text( - f"Reading vector collection {collection_name}...", format=format + f"Reading embeddings collection {collection_name}...", format=format ) try: collections = asyncio.run( @@ -78,9 +78,9 @@ def read_collections( click.echo(f"Failed to find collection: {exc}", err=True) sys.exit(1) else: - click_echo_if_text("Listing all vector collections...", format=format) + click_echo_if_text("Listing all embeddings collections...", format=format) try: - collections = asyncio.run(client.list_collections()).get("collections", []) + collections = asyncio.run(client.list_collections()) click_echo_if_text(f"Found {len(collections)} collection(s)", format=format) click_echo_dict_format(input_dict=collections, format=format) except httpx.HTTPError as exc: @@ -93,7 +93,7 @@ def read_collections( @click.pass_context def delete_collection(ctx: click.Context, collection_name: str | None) -> None: """ - Delete a vector collection. + Delete a embeddings collection. COLLECTION_NAME: collection name to delete """ @@ -105,3 +105,5 @@ def delete_collection(ctx: click.Context, collection_name: str | None) -> None: except httpx.HTTPError as exc: click.echo(f"Failed to delete collection: {exc}", err=True) sys.exit(1) + + click_echo_if_text(f"Successfully deleted collection '{collection_name}'!") diff --git a/gen3/cli/ai/main.py b/gen3/cli/ai/main.py index ccf3ed7c6..6ae96a169 100644 --- a/gen3/cli/ai/main.py +++ b/gen3/cli/ai/main.py @@ -18,6 +18,9 @@ # authz: authz resource path (optional, will default to collection) # collection_id / collection_name: collection embedding should be placed in (if name is provided, use list_collection(collection_name=provided) to determine the ID) # ** additional columns are interpretted as metadata + +gen3 --auth ~/.gen3/local_helm_test_user.json --endpoint "http://127.0.0.1:4142" ai --api-prefix "" embeddings publish ./tests/embeddings_tests/expr.tsv --default-collection expr + gen3 ai embeddings publish ./tests/embeddings_tests/expr.tsv --default-collection expr gen3 ai embeddings publish ./tests/embeddings_tests/hist.tsv --default-collection hist gen3 ai embeddings publish ./tests/embeddings_tests/summ.tsv --default-collection summ @@ -35,6 +38,7 @@ from gen3.ai import EmbeddingsClient from gen3.cli.ai.embeddings import ( chunk_and_embed_text, + convert_embeddings, delete_embeddings, publish_embeddings, read_embeddings, @@ -88,6 +92,7 @@ def collections(ctx: click.Context) -> None: embeddings.add_command(read_embeddings, name="read") embeddings.add_command(delete_embeddings, name="delete") embeddings.add_command(chunk_and_embed_text, name="embed-files") +embeddings.add_command(convert_embeddings, name="convert") collections.add_command(create_collection, name="create") collections.add_command(read_collections, name="read")