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pyxalign_options.json
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712 lines (712 loc) · 47.8 KB
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{
"AlignmentOptions.device.device_type": "gpu",
"AlignmentOptions.device.gpu.chunking_enabled": true,
"AlignmentOptions.device.gpu.chunk_length": "20",
"AlignmentOptions.device.gpu.n_gpus": "1",
"AlignmentOptions.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.cross_correlation.device.device_type": "gpu",
"AlignmentTaskOptions.cross_correlation.device.gpu.chunking_enabled": true,
"AlignmentTaskOptions.cross_correlation.device.gpu.chunk_length": "20",
"AlignmentTaskOptions.cross_correlation.device.gpu.n_gpus": "1",
"AlignmentTaskOptions.cross_correlation.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.cross_correlation.iterations": "100",
"AlignmentTaskOptions.cross_correlation.binning": "4",
"AlignmentTaskOptions.cross_correlation.filter_position": "101",
"AlignmentTaskOptions.cross_correlation.filter_data": "0.005",
"AlignmentTaskOptions.cross_correlation.precision": "0.01",
"AlignmentTaskOptions.cross_correlation.remove_slow_variation": false,
"AlignmentTaskOptions.cross_correlation.use_end_corrections": false,
"AlignmentTaskOptions.cross_correlation.apply_optional_clamp": true,
"AlignmentTaskOptions.cross_correlation.crop.horizontal_range": "0",
"AlignmentTaskOptions.cross_correlation.crop.vertical_range": "0",
"AlignmentTaskOptions.cross_correlation.crop.horizontal_offset": "0",
"AlignmentTaskOptions.cross_correlation.crop.vertical_offset": "0",
"AlignmentTaskOptions.cross_correlation.crop.enabled": false,
"AlignmentTaskOptions.cross_correlation.crop.return_view": false,
"AlignmentTaskOptions.projection_matching.device.device_type": "gpu",
"AlignmentTaskOptions.projection_matching.device.gpu.chunking_enabled": true,
"AlignmentTaskOptions.projection_matching.device.gpu.chunk_length": "20",
"AlignmentTaskOptions.projection_matching.device.gpu.n_gpus": "1",
"AlignmentTaskOptions.projection_matching.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.iterations": "300",
"AlignmentTaskOptions.projection_matching.high_pass_filter": "0.005",
"AlignmentTaskOptions.projection_matching.tukey_shape_parameter": "0.2",
"AlignmentTaskOptions.projection_matching.reconstruction_mask.enabled": true,
"AlignmentTaskOptions.projection_matching.reconstruction_mask.rad_apod": "0",
"AlignmentTaskOptions.projection_matching.reconstruction_mask.radial_smooth": "5",
"AlignmentTaskOptions.projection_matching.secondary_mask.enabled": false,
"AlignmentTaskOptions.projection_matching.secondary_mask.rad_apod": "100",
"AlignmentTaskOptions.projection_matching.secondary_mask.radial_smooth": "5",
"AlignmentTaskOptions.projection_matching.step_relax": "0.1",
"AlignmentTaskOptions.projection_matching.min_step_size": "0.01",
"AlignmentTaskOptions.projection_matching.max_step_size": "0.5",
"AlignmentTaskOptions.projection_matching.regularization.enabled": false,
"AlignmentTaskOptions.projection_matching.regularization.local_TV_lambda": "0.0001",
"AlignmentTaskOptions.projection_matching.regularization.iterations": "10",
"AlignmentTaskOptions.projection_matching.keep_on_gpu": false,
"AlignmentTaskOptions.projection_matching.reconstruct.astra.back_project_gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.reconstruct.astra.forward_project_gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.reconstruct.filter.device.device_type": "gpu",
"AlignmentTaskOptions.projection_matching.reconstruct.filter.device.gpu.chunking_enabled": true,
"AlignmentTaskOptions.projection_matching.reconstruct.filter.device.gpu.chunk_length": "20",
"AlignmentTaskOptions.projection_matching.reconstruct.filter.device.gpu.n_gpus": "1",
"AlignmentTaskOptions.projection_matching.reconstruct.filter.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.reconstruct.geometry.tilt_angle": "0.0",
"AlignmentTaskOptions.projection_matching.reconstruct.geometry.skew_angle": "0.0",
"AlignmentTaskOptions.projection_matching.crop.horizontal_range": "0",
"AlignmentTaskOptions.projection_matching.crop.vertical_range": "0",
"AlignmentTaskOptions.projection_matching.crop.horizontal_offset": "0",
"AlignmentTaskOptions.projection_matching.crop.vertical_offset": "0",
"AlignmentTaskOptions.projection_matching.crop.enabled": false,
"AlignmentTaskOptions.projection_matching.crop.return_view": false,
"AlignmentTaskOptions.projection_matching.downsample.type": "fft",
"AlignmentTaskOptions.projection_matching.downsample.scale": "1",
"AlignmentTaskOptions.projection_matching.downsample.enabled": false,
"AlignmentTaskOptions.projection_matching.downsample.device.device_type": "gpu",
"AlignmentTaskOptions.projection_matching.downsample.device.gpu.chunking_enabled": true,
"AlignmentTaskOptions.projection_matching.downsample.device.gpu.chunk_length": "20",
"AlignmentTaskOptions.projection_matching.downsample.device.gpu.n_gpus": "1",
"AlignmentTaskOptions.projection_matching.downsample.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.downsample.use_gaussian_filter": true,
"AlignmentTaskOptions.projection_matching.projection_shift_type": "fft",
"AlignmentTaskOptions.projection_matching.mask_shift_type": "circ",
"AlignmentTaskOptions.projection_matching.prevent_wrapping_from_shift": false,
"AlignmentTaskOptions.projection_matching.filter_directions": "(2,)",
"AlignmentTaskOptions.projection_matching.momentum.enabled": false,
"AlignmentTaskOptions.projection_matching.momentum.memory": "2",
"AlignmentTaskOptions.projection_matching.momentum.alpha": "2",
"AlignmentTaskOptions.projection_matching.momentum.gain": "0.5",
"AlignmentTaskOptions.projection_matching.plot.update.enabled": false,
"AlignmentTaskOptions.projection_matching.plot.update.stride": "1",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.cmap": "bone",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.horizontal_range": "0",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.vertical_range": "0",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.horizontal_offset": "0",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.vertical_offset": "0",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.enabled": false,
"AlignmentTaskOptions.projection_matching.plot.reconstruction.crop.return_view": false,
"AlignmentTaskOptions.projection_matching.plot.reconstruction.scalebar.enabled": true,
"AlignmentTaskOptions.projection_matching.plot.reconstruction.scalebar.fractional_width": "0.15",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.process_func": "None",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.index": "None",
"AlignmentTaskOptions.projection_matching.plot.reconstruction.clim": "None",
"AlignmentTaskOptions.projection_matching.plot.projections.cmap": "bone",
"AlignmentTaskOptions.projection_matching.plot.projections.crop.horizontal_range": "0",
"AlignmentTaskOptions.projection_matching.plot.projections.crop.vertical_range": "0",
"AlignmentTaskOptions.projection_matching.plot.projections.crop.horizontal_offset": "0",
"AlignmentTaskOptions.projection_matching.plot.projections.crop.vertical_offset": "0",
"AlignmentTaskOptions.projection_matching.plot.projections.crop.enabled": false,
"AlignmentTaskOptions.projection_matching.plot.projections.crop.return_view": false,
"AlignmentTaskOptions.projection_matching.plot.projections.scalebar.enabled": true,
"AlignmentTaskOptions.projection_matching.plot.projections.scalebar.fractional_width": "0.15",
"AlignmentTaskOptions.projection_matching.plot.projections.process_func": "None",
"AlignmentTaskOptions.projection_matching.plot.projections.index": "None",
"AlignmentTaskOptions.projection_matching.plot.projections.clim": "None",
"AlignmentTaskOptions.projection_matching.refine_geometry.enabled": false,
"AlignmentTaskOptions.projection_matching.refine_geometry.device.device_type": "gpu",
"AlignmentTaskOptions.projection_matching.refine_geometry.device.gpu.chunking_enabled": true,
"AlignmentTaskOptions.projection_matching.refine_geometry.device.gpu.chunk_length": "20",
"AlignmentTaskOptions.projection_matching.refine_geometry.device.gpu.n_gpus": "1",
"AlignmentTaskOptions.projection_matching.refine_geometry.device.gpu.gpu_indices": "(0,)",
"AlignmentTaskOptions.projection_matching.refine_geometry.step_relax": "0.01",
"AlignmentTaskOptions.projection_matching.interactive_viewer.close_old_windows": true,
"AlignmentTaskOptions.projection_matching.interactive_viewer.update.enabled": true,
"AlignmentTaskOptions.projection_matching.interactive_viewer.update.stride": "10",
"ArrayViewerOptions.slider_axis": "0",
"ArrayViewerOptions.start_index": "0",
"ArrayViewerOptions.auto_adjust_clim": false,
"AstraOptions.back_project_gpu_indices": "(0,)",
"AstraOptions.forward_project_gpu_indices": "(0,)",
"CoordinateSearchOptions.center_estimate": "None",
"CoordinateSearchOptions.range": "None",
"CoordinateSearchOptions.spacing": "None",
"CoordinateSearchOptions.enabled": false,
"CropOptions.horizontal_range": "0",
"CropOptions.vertical_range": "0",
"CropOptions.horizontal_offset": "0",
"CropOptions.vertical_offset": "0",
"CropOptions.enabled": false,
"CropOptions.return_view": false,
"CrossCorrelationOptions.device.device_type": "gpu",
"CrossCorrelationOptions.device.gpu.chunking_enabled": true,
"CrossCorrelationOptions.device.gpu.chunk_length": "20",
"CrossCorrelationOptions.device.gpu.n_gpus": "1",
"CrossCorrelationOptions.device.gpu.gpu_indices": "(0,)",
"CrossCorrelationOptions.iterations": "100",
"CrossCorrelationOptions.binning": "4",
"CrossCorrelationOptions.filter_position": "101",
"CrossCorrelationOptions.filter_data": "0.005",
"CrossCorrelationOptions.precision": "0.01",
"CrossCorrelationOptions.remove_slow_variation": false,
"CrossCorrelationOptions.use_end_corrections": false,
"CrossCorrelationOptions.apply_optional_clamp": true,
"CrossCorrelationOptions.crop.horizontal_range": "0",
"CrossCorrelationOptions.crop.vertical_range": "0",
"CrossCorrelationOptions.crop.horizontal_offset": "0",
"CrossCorrelationOptions.crop.vertical_offset": "0",
"CrossCorrelationOptions.crop.enabled": false,
"CrossCorrelationOptions.crop.return_view": false,
"DeviceOptions.device_type": "gpu",
"DeviceOptions.gpu.chunking_enabled": true,
"DeviceOptions.gpu.chunk_length": "20",
"DeviceOptions.gpu.n_gpus": "1",
"DeviceOptions.gpu.gpu_indices": "(0,)",
"DownsampleOptions.type": "fft",
"DownsampleOptions.scale": "1",
"DownsampleOptions.enabled": false,
"DownsampleOptions.device.device_type": "gpu",
"DownsampleOptions.device.gpu.chunking_enabled": true,
"DownsampleOptions.device.gpu.chunk_length": "20",
"DownsampleOptions.device.gpu.n_gpus": "1",
"DownsampleOptions.device.gpu.gpu_indices": "(0,)",
"DownsampleOptions.use_gaussian_filter": true,
"EstimateCenterOptions.downsample.type": "fft",
"EstimateCenterOptions.downsample.scale": "4",
"EstimateCenterOptions.downsample.enabled": true,
"EstimateCenterOptions.downsample.device.device_type": "gpu",
"EstimateCenterOptions.downsample.device.gpu.chunking_enabled": true,
"EstimateCenterOptions.downsample.device.gpu.chunk_length": "20",
"EstimateCenterOptions.downsample.device.gpu.n_gpus": "1",
"EstimateCenterOptions.downsample.device.gpu.gpu_indices": "(0,)",
"EstimateCenterOptions.downsample.use_gaussian_filter": true,
"EstimateCenterOptions.crop.horizontal_range": "0",
"EstimateCenterOptions.crop.vertical_range": "0",
"EstimateCenterOptions.crop.horizontal_offset": "0",
"EstimateCenterOptions.crop.vertical_offset": "0",
"EstimateCenterOptions.crop.enabled": false,
"EstimateCenterOptions.crop.return_view": false,
"EstimateCenterOptions.projection_matching.device.device_type": "gpu",
"EstimateCenterOptions.projection_matching.device.gpu.chunking_enabled": true,
"EstimateCenterOptions.projection_matching.device.gpu.chunk_length": "20",
"EstimateCenterOptions.projection_matching.device.gpu.n_gpus": "1",
"EstimateCenterOptions.projection_matching.device.gpu.gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.iterations": "1",
"EstimateCenterOptions.projection_matching.high_pass_filter": "0.005",
"EstimateCenterOptions.projection_matching.tukey_shape_parameter": "0.2",
"EstimateCenterOptions.projection_matching.reconstruction_mask.enabled": true,
"EstimateCenterOptions.projection_matching.reconstruction_mask.rad_apod": "0",
"EstimateCenterOptions.projection_matching.reconstruction_mask.radial_smooth": "5",
"EstimateCenterOptions.projection_matching.secondary_mask.enabled": false,
"EstimateCenterOptions.projection_matching.secondary_mask.rad_apod": "100",
"EstimateCenterOptions.projection_matching.secondary_mask.radial_smooth": "5",
"EstimateCenterOptions.projection_matching.step_relax": "0.1",
"EstimateCenterOptions.projection_matching.min_step_size": "0.01",
"EstimateCenterOptions.projection_matching.max_step_size": "0.5",
"EstimateCenterOptions.projection_matching.regularization.enabled": false,
"EstimateCenterOptions.projection_matching.regularization.local_TV_lambda": "0.0001",
"EstimateCenterOptions.projection_matching.regularization.iterations": "10",
"EstimateCenterOptions.projection_matching.keep_on_gpu": false,
"EstimateCenterOptions.projection_matching.reconstruct.astra.back_project_gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.reconstruct.astra.forward_project_gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.reconstruct.filter.device.device_type": "gpu",
"EstimateCenterOptions.projection_matching.reconstruct.filter.device.gpu.chunking_enabled": true,
"EstimateCenterOptions.projection_matching.reconstruct.filter.device.gpu.chunk_length": "20",
"EstimateCenterOptions.projection_matching.reconstruct.filter.device.gpu.n_gpus": "1",
"EstimateCenterOptions.projection_matching.reconstruct.filter.device.gpu.gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.reconstruct.geometry.tilt_angle": "0.0",
"EstimateCenterOptions.projection_matching.reconstruct.geometry.skew_angle": "0.0",
"EstimateCenterOptions.projection_matching.crop.horizontal_range": "0",
"EstimateCenterOptions.projection_matching.crop.vertical_range": "0",
"EstimateCenterOptions.projection_matching.crop.horizontal_offset": "0",
"EstimateCenterOptions.projection_matching.crop.vertical_offset": "0",
"EstimateCenterOptions.projection_matching.crop.enabled": false,
"EstimateCenterOptions.projection_matching.crop.return_view": false,
"EstimateCenterOptions.projection_matching.downsample.type": "fft",
"EstimateCenterOptions.projection_matching.downsample.scale": "1",
"EstimateCenterOptions.projection_matching.downsample.enabled": false,
"EstimateCenterOptions.projection_matching.downsample.device.device_type": "gpu",
"EstimateCenterOptions.projection_matching.downsample.device.gpu.chunking_enabled": true,
"EstimateCenterOptions.projection_matching.downsample.device.gpu.chunk_length": "20",
"EstimateCenterOptions.projection_matching.downsample.device.gpu.n_gpus": "1",
"EstimateCenterOptions.projection_matching.downsample.device.gpu.gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.downsample.use_gaussian_filter": true,
"EstimateCenterOptions.projection_matching.projection_shift_type": "fft",
"EstimateCenterOptions.projection_matching.mask_shift_type": "circ",
"EstimateCenterOptions.projection_matching.prevent_wrapping_from_shift": false,
"EstimateCenterOptions.projection_matching.filter_directions": "(2,)",
"EstimateCenterOptions.projection_matching.momentum.enabled": false,
"EstimateCenterOptions.projection_matching.momentum.memory": "2",
"EstimateCenterOptions.projection_matching.momentum.alpha": "2",
"EstimateCenterOptions.projection_matching.momentum.gain": "0.5",
"EstimateCenterOptions.projection_matching.plot.update.enabled": false,
"EstimateCenterOptions.projection_matching.plot.update.stride": "1",
"EstimateCenterOptions.projection_matching.plot.reconstruction.cmap": "bone",
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.horizontal_range": "0",
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.vertical_range": "0",
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.horizontal_offset": "0",
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.vertical_offset": "0",
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.enabled": false,
"EstimateCenterOptions.projection_matching.plot.reconstruction.crop.return_view": false,
"EstimateCenterOptions.projection_matching.plot.reconstruction.scalebar.enabled": true,
"EstimateCenterOptions.projection_matching.plot.reconstruction.scalebar.fractional_width": "0.15",
"EstimateCenterOptions.projection_matching.plot.reconstruction.process_func": "None",
"EstimateCenterOptions.projection_matching.plot.reconstruction.index": "None",
"EstimateCenterOptions.projection_matching.plot.reconstruction.clim": "None",
"EstimateCenterOptions.projection_matching.plot.projections.cmap": "bone",
"EstimateCenterOptions.projection_matching.plot.projections.crop.horizontal_range": "0",
"EstimateCenterOptions.projection_matching.plot.projections.crop.vertical_range": "0",
"EstimateCenterOptions.projection_matching.plot.projections.crop.horizontal_offset": "0",
"EstimateCenterOptions.projection_matching.plot.projections.crop.vertical_offset": "0",
"EstimateCenterOptions.projection_matching.plot.projections.crop.enabled": false,
"EstimateCenterOptions.projection_matching.plot.projections.crop.return_view": false,
"EstimateCenterOptions.projection_matching.plot.projections.scalebar.enabled": true,
"EstimateCenterOptions.projection_matching.plot.projections.scalebar.fractional_width": "0.15",
"EstimateCenterOptions.projection_matching.plot.projections.process_func": "None",
"EstimateCenterOptions.projection_matching.plot.projections.index": "None",
"EstimateCenterOptions.projection_matching.plot.projections.clim": "None",
"EstimateCenterOptions.projection_matching.refine_geometry.enabled": false,
"EstimateCenterOptions.projection_matching.refine_geometry.device.device_type": "gpu",
"EstimateCenterOptions.projection_matching.refine_geometry.device.gpu.chunking_enabled": true,
"EstimateCenterOptions.projection_matching.refine_geometry.device.gpu.chunk_length": "20",
"EstimateCenterOptions.projection_matching.refine_geometry.device.gpu.n_gpus": "1",
"EstimateCenterOptions.projection_matching.refine_geometry.device.gpu.gpu_indices": "(0,)",
"EstimateCenterOptions.projection_matching.refine_geometry.step_relax": "0.01",
"EstimateCenterOptions.projection_matching.interactive_viewer.close_old_windows": true,
"EstimateCenterOptions.projection_matching.interactive_viewer.update.enabled": false,
"EstimateCenterOptions.projection_matching.interactive_viewer.update.stride": "1",
"EstimateCenterOptions.horizontal_coordinate.center_estimate": "None",
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}